Variant report

Variant	rs3176711
Chromosome Location	chr9:100443945-100443946
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100443223..100445112-chr9:100524336..100526011,2	K562	blood:
2	chr9:100438107..100440042-chr9:100442761..100445535,2	MCF-7	breast:
3	chr9:100442755..100444347-chr9:100682723..100684421,2	K562	blood:
4	chr9:100394960..100396640-chr9:100443760..100446626,2	MCF-7	breast:
5	chr9:100429828..100431541-chr9:100443759..100446138,2	MCF-7	breast:
6	chr9:100426891..100429582-chr9:100442406..100445819,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000136925	Chromatin interaction
ENSG00000136937	Chromatin interaction
ENSG00000136936	Chromatin interaction

Extended variants
information (count: 106 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs1543636	0.80[YRI][hapmap]
rs16923033	1.00[YRI][hapmap];0.94[AFR][1000 genomes]
rs16923041	0.80[YRI][hapmap];0.81[AFR][1000 genomes]
rs16923112	0.86[AFR][1000 genomes]
rs1813875	0.94[AFR][1000 genomes]
rs1928641	0.80[YRI][hapmap]
rs2297155	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs2297156	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs2297158	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs2297159	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs2297160	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs2401635	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs3176623	0.86[AFR][1000 genomes]
rs3176624	0.86[AFR][1000 genomes]
rs3176626	0.86[AFR][1000 genomes]
rs3176628	0.86[AFR][1000 genomes]
rs3176629	0.86[AFR][1000 genomes]
rs3176634	0.82[AFR][1000 genomes]
rs3176635	1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3176637	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs3176638	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs3176644	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs3176651	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs3176657	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3176659	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs3176668	0.86[AFR][1000 genomes]
rs3176669	0.86[AFR][1000 genomes]
rs3176670	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs3176675	0.86[YRI][hapmap];0.86[AFR][1000 genomes]
rs3176682	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs3176685	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs3176687	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3176688	0.80[YRI][hapmap];0.83[AFR][1000 genomes]
rs3176694	0.86[AFR][1000 genomes]
rs3176706	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3176708	0.83[YRI][hapmap];0.86[AFR][1000 genomes]
rs3176712	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3176714	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs3176720	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs3176723	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs3176724	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs3176726	0.80[YRI][hapmap];0.86[AFR][1000 genomes]
rs3176735	0.86[AFR][1000 genomes]
rs3176736	0.86[AFR][1000 genomes]
rs3176740	0.86[AFR][1000 genomes]
rs3176744	0.85[AFR][1000 genomes]
rs3176746	0.86[AFR][1000 genomes]
rs3176747	0.86[AFR][1000 genomes]
rs3802474	0.80[YRI][hapmap]
rs56052819	0.86[AFR][1000 genomes]
rs56200116	0.86[AFR][1000 genomes]
rs57598118	0.86[AFR][1000 genomes]
rs59354722	0.86[AFR][1000 genomes]
rs59662386	0.81[AFR][1000 genomes]
rs59775587	0.86[AFR][1000 genomes]
rs60055057	0.81[AFR][1000 genomes]
rs60463150	0.86[AFR][1000 genomes]
rs60821994	0.86[AFR][1000 genomes]
rs61208411	0.86[AFR][1000 genomes]
rs61221847	0.81[AFR][1000 genomes]
rs61440789	0.86[AFR][1000 genomes]
rs61739366	0.91[AFR][1000 genomes]
rs6478304	0.80[YRI][hapmap]
rs6478305	1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs7021377	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7036604	0.80[YRI][hapmap]
rs7045160	0.86[AFR][1000 genomes]
rs7341850	0.81[AFR][1000 genomes]
rs73498323	0.93[AFR][1000 genomes]
rs73498329	0.94[AFR][1000 genomes]
rs73498332	0.81[AFR][1000 genomes]
rs73498338	0.81[AFR][1000 genomes]
rs73498347	0.81[AFR][1000 genomes]
rs73498348	0.81[AFR][1000 genomes]
rs73498355	0.81[AFR][1000 genomes]
rs73498358	0.81[AFR][1000 genomes]
rs73498359	0.94[AFR][1000 genomes]
rs73498362	0.81[AFR][1000 genomes]
rs73498365	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73498377	0.86[AFR][1000 genomes]
rs73498380	0.86[AFR][1000 genomes]
rs73498381	0.86[AFR][1000 genomes]
rs73500307	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73500321	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73500325	0.86[AFR][1000 genomes]
rs73500326	0.83[AFR][1000 genomes]
rs73500328	0.86[AFR][1000 genomes]
rs73500392	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73500393	0.86[AFR][1000 genomes]
rs73500395	0.86[AFR][1000 genomes]
rs73500396	0.86[AFR][1000 genomes]
rs73500397	0.86[AFR][1000 genomes]
rs73500398	0.86[AFR][1000 genomes]
rs73500400	0.86[AFR][1000 genomes]
rs73502208	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73502210	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs73551090	0.91[AFR][1000 genomes]
rs73554650	0.90[AFR][1000 genomes]
rs7850986	0.86[AFR][1000 genomes]
rs7857174	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs7859979	1.00[YRI][hapmap];0.90[AFR][1000 genomes]
rs7862356	0.86[AFR][1000 genomes]
rs7866961	0.80[YRI][hapmap];0.81[AFR][1000 genomes]
rs7867046	0.80[YRI][hapmap]
rs7869683	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893610	chr9:100324086-100496160	Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100400800-100451600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr9:100401200-100456000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr9:100402400-100451400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr9:100402400-100455600	Strong transcription	Dnd41	blood
5	chr9:100402600-100456000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
6	chr9:100402600-100456200	Strong transcription	Primary B cells from peripheral blood	blood
7	chr9:100402800-100454200	Strong transcription	Fetal Thymus	thymus
8	chr9:100402800-100456000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr9:100403000-100449400	Strong transcription	HSMM	muscle
10	chr9:100403000-100450400	Strong transcription	Duodenum Mucosa	Duodenum
11	chr9:100403000-100454400	Strong transcription	Placenta	Placenta
12	chr9:100403000-100454600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
13	chr9:100403200-100454400	Strong transcription	Rectal Mucosa Donor 31	rectum
14	chr9:100403200-100455000	Strong transcription	Primary T cells fromperipheralblood	blood
15	chr9:100403400-100444200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr9:100403600-100453800	Strong transcription	Rectal Mucosa Donor 29	rectum
17	chr9:100404000-100449200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr9:100404800-100455400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
19	chr9:100410200-100454000	Strong transcription	Fetal Muscle Trunk	muscle
20	chr9:100411200-100451000	Strong transcription	Liver	Liver
21	chr9:100412600-100454200	Strong transcription	Duodenum Smooth Muscle	Duodenum
22	chr9:100413000-100451800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr9:100414400-100448400	Strong transcription	HUVEC	blood vessel
24	chr9:100416400-100448200	Strong transcription	NHDF-Ad	bronchial
25	chr9:100416400-100451200	Strong transcription	Hela-S3	cervix
26	chr9:100423000-100456000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr9:100423400-100451400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr9:100426200-100444200	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr9:100426400-100453600	Strong transcription	Primary B cells from cord blood	blood
30	chr9:100427800-100450800	Weak transcription	Stomach Mucosa	stomach
31	chr9:100429200-100455000	Strong transcription	Primary T helper cells PMA-I stimulated	--
32	chr9:100429200-100455600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr9:100429600-100447000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
34	chr9:100429600-100454000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
35	chr9:100429600-100455400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
36	chr9:100429600-100455800	Strong transcription	Primary monocytes fromperipheralblood	blood
37	chr9:100429800-100456000	Strong transcription	Monocytes-CD14+_RO01746	blood
38	chr9:100431200-100446200	Weak transcription	Gastric	stomach
39	chr9:100433600-100449600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr9:100434400-100455600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr9:100436200-100448200	Strong transcription	A549	lung
42	chr9:100436600-100449800	Strong transcription	Fetal Intestine Large	intestine
43	chr9:100436600-100454600	Strong transcription	Adipose Nuclei	Adipose
44	chr9:100437400-100446200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr9:100437400-100456000	Weak transcription	Pancreatic Islets	Pancreatic Islet
46	chr9:100437600-100446400	Weak transcription	Aorta	Aorta
47	chr9:100437600-100446400	Weak transcription	Small Intestine	intestine
48	chr9:100437600-100449800	Weak transcription	Esophagus	oesophagus
49	chr9:100437600-100451200	Weak transcription	Fetal Heart	heart
50	chr9:100437600-100455800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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