Variant report

Variant	rs2805783
Chromosome Location	chr9:100358515-100358516
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:100210584..100212348-chr9:100357431..100359264,2	MCF-7	breast:
2	chr9:100358063..100359850-chr9:100366510..100368844,2	MCF-7	breast:
3	chr9:100357473..100360015-chr9:100394400..100396329,2	K562	blood:
4	chr9:100248103..100250709-chr9:100357540..100361219,3	MCF-7	breast:
5	chr9:100357134..100359474-chr9:100365218..100367036,2	K562	blood:

Variant related genes	Relation type
ENSG00000136925	Chromatin interaction
ENSG00000136937	Chromatin interaction

Extended variants
information (count: 86 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs1034099	0.82[JPT][hapmap]
rs1034100	0.82[JPT][hapmap]
rs10512254	0.82[JPT][hapmap]
rs1411344	0.82[JPT][hapmap]
rs1543636	0.82[JPT][hapmap]
rs16923041	0.82[JPT][hapmap]
rs16923112	0.82[JPT][hapmap]
rs16923269	0.82[JPT][hapmap]
rs1928641	0.82[JPT][hapmap]
rs1928642	0.82[JPT][hapmap]
rs2245694	0.86[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2282066	0.82[JPT][hapmap]
rs2282067	0.82[JPT][hapmap]
rs2297155	0.82[JPT][hapmap]
rs2297156	0.82[JPT][hapmap]
rs2297157	0.82[JPT][hapmap]
rs2297158	0.82[JPT][hapmap]
rs2297159	0.82[JPT][hapmap]
rs2297160	0.82[JPT][hapmap]
rs2401635	0.82[JPT][hapmap]
rs2773343	0.87[CEU][hapmap];0.85[EUR][1000 genomes]
rs2773344	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs2773350	0.86[CEU][hapmap]
rs2773354	0.87[CEU][hapmap]
rs2773358	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2805774	0.86[CEU][hapmap]
rs2805785	0.87[CEU][hapmap];0.89[CHB][hapmap];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2805786	0.80[EUR][1000 genomes]
rs2805787	0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2805788	0.80[EUR][1000 genomes]
rs2805793	0.81[EUR][1000 genomes]
rs2805831	0.86[CEU][hapmap]
rs28403589	0.82[JPT][hapmap]
rs3176628	0.82[JPT][hapmap]
rs3176629	0.82[JPT][hapmap]
rs3176634	0.82[JPT][hapmap]
rs3176637	0.82[JPT][hapmap]
rs3176638	0.82[JPT][hapmap]
rs3176642	0.82[JPT][hapmap]
rs3176644	0.82[JPT][hapmap]
rs3176651	0.82[JPT][hapmap]
rs3176659	0.82[JPT][hapmap]
rs3176668	0.82[JPT][hapmap]
rs3176670	0.82[JPT][hapmap]
rs3176673	0.82[JPT][hapmap]
rs3176675	0.82[JPT][hapmap]
rs3176682	0.82[JPT][hapmap]
rs3176685	0.82[JPT][hapmap]
rs3176688	0.82[JPT][hapmap]
rs3176694	0.82[JPT][hapmap]
rs3176700	0.82[JPT][hapmap]
rs3176703	0.82[JPT][hapmap]
rs3176708	0.82[JPT][hapmap]
rs3176714	0.82[JPT][hapmap]
rs3176720	0.82[JPT][hapmap]
rs3176721	0.82[JPT][hapmap]
rs3176723	0.82[JPT][hapmap]
rs3176724	0.82[JPT][hapmap]
rs3176726	0.82[JPT][hapmap]
rs3176728	1.00[JPT][hapmap]
rs3176734	0.82[JPT][hapmap]
rs3176740	0.82[JPT][hapmap]
rs3176744	0.82[JPT][hapmap]
rs3176746	0.82[JPT][hapmap]
rs3176751	0.82[JPT][hapmap]
rs3176752	0.82[JPT][hapmap]
rs3750368	0.82[JPT][hapmap]
rs3750369	0.82[JPT][hapmap]
rs3750370	0.82[JPT][hapmap]
rs3763606	0.82[JPT][hapmap]
rs3802472	0.82[JPT][hapmap]
rs3802473	0.82[JPT][hapmap]
rs3802474	0.82[JPT][hapmap]
rs3824494	0.82[JPT][hapmap]
rs6478304	0.82[JPT][hapmap]
rs7025403	0.82[JPT][hapmap]
rs7036604	0.82[JPT][hapmap]
rs7045160	0.82[JPT][hapmap]
rs7341850	0.82[JPT][hapmap]
rs7866961	0.82[JPT][hapmap]
rs7867046	0.82[JPT][hapmap]
rs7869683	0.82[JPT][hapmap]
rs9539	0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039240	chr9:100292680-100415269	Weak transcription Strong transcription Genic enhancers Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv540179	chr9:100292680-100415269	Genic enhancers Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	nsv893610	chr9:100324086-100496160	Active TSS Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:100333600-100361800	Weak transcription	Gastric	stomach
2	chr9:100336200-100360000	Weak transcription	Brain Substantia Nigra	brain
3	chr9:100338400-100361600	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr9:100338600-100360800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr9:100346200-100360800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr9:100348800-100384000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:100350400-100361800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr9:100350600-100360800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr9:100351200-100361800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr9:100353000-100362800	Weak transcription	Esophagus	oesophagus
11	chr9:100353200-100362200	Enhancers	Fetal Brain Male	brain
12	chr9:100353200-100363200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr9:100353400-100359200	Strong transcription	K562	blood
14	chr9:100353600-100358600	Enhancers	Fetal Heart	heart
15	chr9:100354000-100360800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
16	chr9:100354000-100360800	Weak transcription	Lung	lung
17	chr9:100354200-100360600	Weak transcription	GM12878-XiMat	blood
18	chr9:100354800-100363000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr9:100355000-100360800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr9:100355000-100360800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr9:100355000-100360800	Enhancers	Skeletal Muscle Male	skeletal muscle
22	chr9:100355400-100360800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
23	chr9:100355600-100359200	Weak transcription	Brain Germinal Matrix	brain
24	chr9:100356400-100358800	Enhancers	Fetal Brain Female	brain
25	chr9:100356600-100361400	Enhancers	Brain Hippocampus Middle	brain
26	chr9:100356800-100362400	Weak transcription	HUES64 Cell Line	embryonic stem cell
27	chr9:100357000-100358600	Weak transcription	Duodenum Smooth Muscle	Duodenum
28	chr9:100357000-100359400	Weak transcription	Adipose Nuclei	Adipose
29	chr9:100357000-100360200	Weak transcription	Right Ventricle	heart
30	chr9:100357000-100362800	Weak transcription	HSMM	muscle
31	chr9:100357200-100360800	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr9:100357200-100360800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr9:100357200-100363000	Weak transcription	Pancreas	Pancrea
34	chr9:100357200-100363800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr9:100357400-100358600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr9:100357400-100358800	Weak transcription	Brain Cingulate Gyrus	brain
37	chr9:100357400-100358800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr9:100357400-100359400	Weak transcription	Fetal Stomach	stomach
39	chr9:100357400-100360600	Weak transcription	Fetal Muscle Leg	muscle
40	chr9:100357400-100360800	Weak transcription	Sigmoid Colon	Sigmoid Colon
41	chr9:100357400-100360800	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr9:100357400-100363000	Weak transcription	HSMMtube	muscle
43	chr9:100357600-100358600	Weak transcription	Brain Anterior Caudate	brain
44	chr9:100357800-100358600	Weak transcription	Colon Smooth Muscle	Colon
45	chr9:100357800-100358800	Weak transcription	Brain Inferior Temporal Lobe	brain
46	chr9:100357800-100360800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
47	chr9:100358000-100358600	Weak transcription	Stomach Smooth Muscle	stomach
48	chr9:100358400-100358600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr9:100358400-100358600	Enhancers	Fetal Muscle Trunk	muscle
50	chr9:100358400-100359000	Enhancers	Aorta	Aorta

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