Variant report

Variant	rs109836
Chromosome Location	chr6:143091263-143091264
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs13197485	1.00[ASN][1000 genomes]
rs198649	1.00[ASN][1000 genomes]
rs2876529	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs529112	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830828	chr6:142970134-143116517	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv830829	chr6:143058408-143218077	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
4	esv3402921	chr6:143090059-143097157	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143072800-143094800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
2	chr6:143072800-143095200	Strong transcription	Fetal Thymus	thymus
3	chr6:143072800-143095400	Weak transcription	Fetal Kidney	kidney
4	chr6:143073000-143096000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr6:143074000-143094000	Strong transcription	Primary T cells fromperipheralblood	blood
6	chr6:143074800-143095800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:143078200-143096200	Strong transcription	Primary hematopoietic stem cells	blood
8	chr6:143081600-143095400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr6:143081600-143095600	Weak transcription	Stomach Mucosa	stomach
10	chr6:143081800-143091400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
11	chr6:143081800-143092000	Weak transcription	Brain Angular Gyrus	brain
12	chr6:143081800-143093600	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:143081800-143094000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:143081800-143095200	Weak transcription	Colonic Mucosa	Colon
15	chr6:143081800-143095800	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:143081800-143097000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr6:143081800-143105600	Weak transcription	Small Intestine	intestine
18	chr6:143082000-143091800	Weak transcription	Fetal Lung	lung
19	chr6:143082000-143092000	Weak transcription	Brain Substantia Nigra	brain
20	chr6:143082000-143092600	Weak transcription	Brain Cingulate Gyrus	brain
21	chr6:143082000-143092800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr6:143082000-143096200	Weak transcription	A549	lung
23	chr6:143082200-143094400	Weak transcription	HUES48 Cell Line	embryonic stem cell
24	chr6:143082200-143095000	Weak transcription	Pancreatic Islets	Pancreatic Islet
25	chr6:143082200-143095400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr6:143082200-143097000	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr6:143082400-143092800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
28	chr6:143082400-143093400	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr6:143082400-143093600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr6:143083200-143091600	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr6:143083400-143093000	Weak transcription	HUES64 Cell Line	embryonic stem cell
32	chr6:143083400-143097400	Weak transcription	Placenta Amnion	Placenta Amnion
33	chr6:143084200-143096200	Strong transcription	Primary B cells from peripheral blood	blood
34	chr6:143084400-143095000	Weak transcription	Rectal Smooth Muscle	rectum
35	chr6:143084600-143091600	Weak transcription	Fetal Brain Male	brain
36	chr6:143084600-143093400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr6:143084600-143094200	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr6:143085000-143094200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
39	chr6:143085200-143096400	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr6:143085400-143096000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
41	chr6:143085600-143096000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
42	chr6:143085600-143096200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
43	chr6:143085800-143094600	Weak transcription	NHDF-Ad	bronchial
44	chr6:143086200-143092200	Weak transcription	Ovary	ovary
45	chr6:143086800-143096200	Strong transcription	GM12878-XiMat	blood
46	chr6:143087000-143097400	Weak transcription	Fetal Heart	heart
47	chr6:143087200-143092200	Weak transcription	HSMMtube	muscle
48	chr6:143087200-143096000	Strong transcription	Primary B cells from cord blood	blood
49	chr6:143087600-143096200	Strong transcription	HSMM	muscle
50	chr6:143087800-143096200	Strong transcription	Breast Myoepithelial Primary Cells	Breast

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