Variant report

Variant	rs529112
Chromosome Location	chr6:143117487-143117488
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143116941..143118890-chr6:143133328..143134995,2	MCF-7	breast:
2	chr6:143116694..143119328-chr6:143121007..143124845,4	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs109836	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13197485	1.00[ASN][1000 genomes]
rs198649	1.00[ASN][1000 genomes]
rs2876529	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949088	chr6:142561402-143128849	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
2	nsv830829	chr6:143058408-143218077	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143095800-143117600	Weak transcription	Fetal Lung	lung
2	chr6:143095800-143122200	Weak transcription	NHEK	skin
3	chr6:143096000-143117800	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr6:143096000-143122000	Weak transcription	Fetal Intestine Small	intestine
5	chr6:143096200-143120800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr6:143096200-143140800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr6:143103600-143117600	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr6:143103600-143124800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr6:143103800-143125400	Weak transcription	Fetal Thymus	thymus
10	chr6:143105800-143121000	Weak transcription	Brain Angular Gyrus	brain
11	chr6:143105800-143140400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr6:143106000-143118800	Weak transcription	Primary B cells from cord blood	blood
13	chr6:143106000-143128200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr6:143106000-143140400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
15	chr6:143108200-143121200	Weak transcription	HSMM	muscle
16	chr6:143108400-143119400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr6:143108800-143123600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr6:143109200-143117600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr6:143109200-143121000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr6:143112200-143139400	Weak transcription	HepG2	liver
21	chr6:143112400-143117600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr6:143112600-143117600	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr6:143113200-143119400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr6:143113200-143140400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:143113800-143120800	Weak transcription	Pancreas	Pancrea
26	chr6:143114200-143140800	Weak transcription	Fetal Muscle Leg	muscle
27	chr6:143116000-143117800	Weak transcription	NHDF-Ad	bronchial
28	chr6:143116000-143121000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr6:143116000-143125400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
30	chr6:143116000-143139600	Weak transcription	Small Intestine	intestine
31	chr6:143116200-143132200	Weak transcription	Fetal Brain Female	brain
32	chr6:143117000-143117600	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr6:143117000-143117600	Genic enhancers	Primary T helper cells PMA-I stimulated	--
34	chr6:143117000-143117600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr6:143117000-143129400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
36	chr6:143117000-143140800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
37	chr6:143117200-143117600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
38	chr6:143117200-143117800	Weak transcription	Right Atrium	heart
39	chr6:143117200-143117800	Weak transcription	Right Ventricle	heart
40	chr6:143117200-143118000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr6:143117200-143118000	Weak transcription	GM12878-XiMat	blood
42	chr6:143117200-143118200	Enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr6:143117200-143118800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr6:143117400-143118000	Enhancers	Brain Anterior Caudate	brain
45	chr6:143117400-143118000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
46	chr6:143117400-143118200	Enhancers	Primary neutrophils fromperipheralblood	blood
47	chr6:143117400-143118200	Enhancers	Muscle Satellite Cultured Cells	--
48	chr6:143117400-143118200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
49	chr6:143117400-143118400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr6:143117400-143118600	Enhancers	Primary T cells from cord blood	blood

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