Variant report

Variant	rs2876529
Chromosome Location	chr6:143145259-143145260
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:143143462..143146087-chr6:143265614..143267606,3	MCF-7	breast:
2	chr6:143144618..143147741-chr6:143149316..143151802,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000010818	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs109836	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs13197485	1.00[ASN][1000 genomes]
rs198649	1.00[ASN][1000 genomes]
rs529112	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830829	chr6:143058408-143218077	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
2	nsv1019558	chr6:143121577-143154554	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:98 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:143133400-143145600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr6:143140400-143152000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:143140800-143152000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr6:143141200-143145600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr6:143141400-143145400	Enhancers	Fetal Lung	lung
6	chr6:143141400-143152000	Weak transcription	Fetal Muscle Trunk	muscle
7	chr6:143141600-143152200	Weak transcription	NH-A	brain
8	chr6:143141600-143153800	Weak transcription	HSMMtube	muscle
9	chr6:143142000-143146800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
10	chr6:143142000-143147800	Weak transcription	Stomach Mucosa	stomach
11	chr6:143142000-143153400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr6:143142200-143148000	Weak transcription	A549	lung
13	chr6:143142200-143151600	Weak transcription	Osteobl	bone
14	chr6:143142200-143153400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr6:143142400-143145800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr6:143142400-143145800	Weak transcription	NHEK	skin
17	chr6:143142600-143147600	Weak transcription	HUVEC	blood vessel
18	chr6:143142600-143153800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr6:143142600-143155000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr6:143142800-143145600	Weak transcription	Fetal Intestine Large	intestine
21	chr6:143142800-143147000	Enhancers	Fetal Brain Female	brain
22	chr6:143142800-143155000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr6:143143000-143145800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr6:143143200-143145600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr6:143143200-143145800	Weak transcription	Stomach Smooth Muscle	stomach
26	chr6:143143200-143153800	Weak transcription	Pancreatic Islets	Pancreatic Islet
27	chr6:143143400-143145600	Weak transcription	Fetal Kidney	kidney
28	chr6:143143400-143145600	Weak transcription	Fetal Stomach	stomach
29	chr6:143143400-143145600	Weak transcription	Ovary	ovary
30	chr6:143143400-143145600	Weak transcription	Sigmoid Colon	Sigmoid Colon
31	chr6:143143400-143145600	Weak transcription	NHDF-Ad	bronchial
32	chr6:143143400-143145800	Weak transcription	Small Intestine	intestine
33	chr6:143143400-143147400	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr6:143143400-143147600	Weak transcription	Fetal Heart	heart
35	chr6:143143400-143148600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr6:143143400-143152000	Weak transcription	Gastric	stomach
37	chr6:143143400-143157400	Weak transcription	Rectal Smooth Muscle	rectum
38	chr6:143143400-143159600	Weak transcription	HepG2	liver
39	chr6:143143400-143160600	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr6:143143800-143151400	Weak transcription	Thymus	Thymus
41	chr6:143144000-143151800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr6:143144000-143152000	Weak transcription	Primary B cells from cord blood	blood
43	chr6:143144000-143153800	Weak transcription	HSMM	muscle
44	chr6:143144000-143165800	Weak transcription	Liver	Liver
45	chr6:143144200-143145600	Weak transcription	NHLF	lung
46	chr6:143144200-143145800	Weak transcription	Aorta	Aorta
47	chr6:143144200-143145800	Weak transcription	Brain Germinal Matrix	brain
48	chr6:143144200-143145800	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr6:143144200-143154200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr6:143144200-143156000	Weak transcription	Primary B cells from peripheral blood	blood

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