Variant report

No.	Distal block	Cell Line	Cell type
1	chr9:101215201..101217773-chr9:101284476..101287150,2	MCF-7	breast:
2	chr9:101212093..101214362-chr9:101215646..101217981,2	MCF-7	breast:
3	chr9:101207244..101211117-chr9:101214976..101217610,3	MCF-7	breast:
4	chr9:101215712..101216344-chr9:101241903..101242528,2	MCF-7	breast:

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10818955	0.89[CHB][hapmap];0.90[JPT][hapmap];0.92[ASN][1000 genomes]
rs10986244	1.00[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.87[ASN][1000 genomes]
rs10986301	1.00[CHB][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs10986316	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs10986439	0.81[MEX][hapmap]
rs12339416	0.82[ASN][1000 genomes]
rs12343354	0.85[AMR][1000 genomes]
rs12348935	0.87[ASN][1000 genomes]
rs12349881	0.91[ASN][1000 genomes]
rs12351078	0.86[AFR][1000 genomes]
rs12352195	1.00[CHB][hapmap];1.00[GIH][hapmap];0.95[JPT][hapmap];0.91[ASN][1000 genomes]
rs1336819	0.95[JPT][hapmap]
rs2779551	0.82[MEX][hapmap]
rs28735883	0.91[ASN][1000 genomes]
rs55923702	0.81[ASN][1000 genomes]
rs60421482	0.93[ASN][1000 genomes]
rs60737529	0.93[ASN][1000 genomes]
rs7023937	0.81[MEX][hapmap]
rs7024036	0.85[AFR][1000 genomes]
rs7028271	0.86[AFR][1000 genomes]
rs7029453	0.94[EUR][1000 genomes]
rs7042032	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7043160	0.94[EUR][1000 genomes]
rs7357609	0.90[JPT][hapmap]
rs73655448	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101201000-101221200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:101204600-101218000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr9:101205000-101218200	Weak transcription	Brain Angular Gyrus	brain
4	chr9:101213000-101216000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr9:101213400-101216000	Weak transcription	Osteobl	bone
6	chr9:101214400-101216200	Weak transcription	NHEK	skin
7	chr9:101214400-101217800	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr9:101215800-101216400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr9:101215800-101216600	Enhancers	NH-A	brain
10	chr9:101215800-101219000	Enhancers	HMEC	breast

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