Variant report

Variant	rs2779551
Chromosome Location	chr9:101253226-101253227
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:101251695..101254611-chr9:101254808..101256523,2	MCF-7	breast:
2	chr9:101223608..101225770-chr9:101250679..101253529,2	K562	blood:
3	chr9:101246815..101248713-chr9:101251837..101253936,2	K562	blood:

Extended variants
information (count: 9 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs1007651	0.89[YRI][hapmap]
rs10986322	0.82[MEX][hapmap]
rs10986439	0.81[MEX][hapmap];1.00[YRI][hapmap]
rs2808559	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7023937	0.81[MEX][hapmap];0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430085	chr9:100928245-101339645	Flanking Active TSS Enhancers Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv831665	chr9:101170061-101367692	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv614936	chr9:101182698-101680380	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv6630	chr9:101236324-101267349	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

Variant related diseases (count:1)

Disease	PMID	Source
Post-traumatic stress disorder (asjusted for relatedness)	23726511	GWAS catalog

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:101247000-101263800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr9:101248400-101264200	Weak transcription	Brain Angular Gyrus	brain
3	chr9:101248800-101264200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr9:101250000-101254200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr9:101250000-101255000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr9:101250200-101254400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr9:101250200-101254400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr9:101250800-101254600	Enhancers	Muscle Satellite Cultured Cells	--
9	chr9:101251400-101255600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr9:101251600-101253400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr9:101251600-101254200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr9:101251600-101258400	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr9:101251600-101263800	Weak transcription	Placenta Amnion	Placenta Amnion
14	chr9:101251800-101253400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr9:101251800-101253400	Weak transcription	NHDF-Ad	bronchial
16	chr9:101251800-101254000	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr9:101252400-101254200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr9:101252600-101254200	Enhancers	HepG2	liver
19	chr9:101252600-101254400	Enhancers	HSMMtube	muscle
20	chr9:101252600-101254600	Enhancers	Osteobl	bone
21	chr9:101252800-101254400	Enhancers	HSMM	muscle
22	chr9:101252800-101254600	Enhancers	Liver	Liver
23	chr9:101253000-101253400	Enhancers	Fetal Intestine Large	intestine
24	chr9:101253000-101253400	Enhancers	Fetal Muscle Trunk	muscle
25	chr9:101253000-101254600	Enhancers	NH-A	brain
26	chr9:101253200-101253800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr9:101253200-101254000	Enhancers	ES-I3 Cell Line	embryonic stem cell
28	chr9:101253200-101254400	Enhancers	NHLF	lung
29	chr9:101253200-101255200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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