Variant report

Variant	rs10989504
Chromosome Location	chr9:104206096-104206097
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104190295..104194061-chr9:104205470..104208320,4	K562	blood:

Variant related genes	Relation type
ENSG00000136872	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs12342048	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv893626	chr9:104172936-104324545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv614962	chr9:104204614-104240708	Enhancers Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104195600-104207200	Enhancers	HepG2	liver
2	chr9:104197000-104211400	Weak transcription	Right Atrium	heart
3	chr9:104197400-104209600	Enhancers	Fetal Intestine Large	intestine
4	chr9:104200800-104206200	Weak transcription	Pancreatic Islets	Pancreatic Islet
5	chr9:104203200-104206400	Enhancers	Pancreas	Pancrea
6	chr9:104204800-104211400	Weak transcription	Left Ventricle	heart
7	chr9:104205000-104209600	Enhancers	Fetal Intestine Small	intestine
8	chr9:104205200-104206200	Flanking Active TSS	Liver	Liver
9	chr9:104205200-104206200	Enhancers	Stomach Mucosa	stomach
10	chr9:104205200-104206400	Enhancers	Brain Germinal Matrix	brain
11	chr9:104205200-104208000	Enhancers	Colon Smooth Muscle	Colon
12	chr9:104205400-104206200	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr9:104205400-104206200	Enhancers	Skeletal Muscle Male	skeletal muscle
14	chr9:104205400-104206400	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr9:104205400-104206600	Enhancers	Fetal Brain Female	brain
16	chr9:104205400-104207000	Enhancers	Fetal Brain Male	brain
17	chr9:104205600-104206400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr9:104205600-104206400	Enhancers	Brain Cingulate Gyrus	brain
19	chr9:104205600-104207200	Enhancers	Brain Anterior Caudate	brain
20	chr9:104205600-104211400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
21	chr9:104205800-104206400	Enhancers	Brain Angular Gyrus	brain
22	chr9:104205800-104206400	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr9:104205800-104206400	Enhancers	Fetal Muscle Leg	muscle
24	chr9:104205800-104207200	Weak transcription	Duodenum Smooth Muscle	Duodenum
25	chr9:104205800-104207600	Enhancers	Duodenum Mucosa	Duodenum
26	chr9:104205800-104208200	Enhancers	Brain Hippocampus Middle	brain
27	chr9:104205800-104211000	Weak transcription	Fetal Heart	heart
28	chr9:104206000-104206800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
29	chr9:104206000-104209000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr9:104206000-104210800	Weak transcription	Psoas Muscle	Psoas

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