Variant report

Variant	rs12342048
Chromosome Location	chr9:104178656-104178657
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:104175126..104176878-chr9:104177737..104179580,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10989504	0.81[EUR][1000 genomes]
rs10989518	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046975	chr9:104167583-104659873	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv893626	chr9:104172936-104324545	Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:104172000-104179200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr9:104172000-104179400	Weak transcription	Pancreas	Pancrea
3	chr9:104172000-104180800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr9:104172800-104180800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:104172800-104181200	Weak transcription	Fetal Heart	heart
6	chr9:104172800-104187000	Weak transcription	Left Ventricle	heart
7	chr9:104173600-104180400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr9:104176400-104180800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr9:104176400-104185600	Weak transcription	Cortex derived primary cultured neurospheres	brain
10	chr9:104178000-104179200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr9:104178000-104179400	Weak transcription	HepG2	liver
12	chr9:104178000-104182600	Weak transcription	Liver	Liver
13	chr9:104178200-104179200	Weak transcription	Duodenum Smooth Muscle	Duodenum
14	chr9:104178200-104179200	Weak transcription	Stomach Smooth Muscle	stomach
15	chr9:104178200-104179600	Weak transcription	Brain Hippocampus Middle	brain
16	chr9:104178200-104179800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr9:104178200-104180200	Weak transcription	Fetal Lung	lung
18	chr9:104178200-104180800	Weak transcription	Aorta	Aorta
19	chr9:104178200-104182200	Weak transcription	Ovary	ovary
20	chr9:104178200-104186800	Weak transcription	Fetal Brain Female	brain
21	chr9:104178400-104183600	Weak transcription	Fetal Intestine Large	intestine
22	chr9:104178400-104187000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr9:104178600-104179800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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