Variant report

Variant	rs10991813
Chromosome Location	chr9:93949015-93949016
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:93939078..93941817-chr9:93947414..93952988,4	K562	blood:
2	chr9:93948011..93949691-chr9:93951858..93953377,2	MCF-7	breast:
3	chr9:93941910..93945011-chr9:93947085..93949384,3	K562	blood:
4	chr9:93944150..93946798-chr9:93947208..93949321,3	MCF-7	breast:
5	chr9:93943125..93945668-chr9:93947670..93950662,2	K562	blood:

Variant related genes	Relation type
ENSG00000229694	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10991816	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10991820	1.00[CEU][hapmap];0.85[CHB][hapmap];0.86[JPT][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10991835	0.82[AMR][1000 genomes]
rs12236714	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12238485	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3884186	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs3914139	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7020997	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7035931	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7036028	0.95[CEU][hapmap];0.83[CHB][hapmap];0.85[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93940800-93954000	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr9:93941000-93953400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr9:93941000-93957400	Weak transcription	Gastric	stomach
4	chr9:93942200-93950000	Weak transcription	HSMM	muscle
5	chr9:93942400-93950000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr9:93945600-93949200	Weak transcription	Placenta	Placenta
7	chr9:93947000-93950000	Enhancers	HepG2	liver
8	chr9:93947600-93950200	Enhancers	Fetal Intestine Large	intestine
9	chr9:93947800-93950200	Enhancers	Fetal Intestine Small	intestine
10	chr9:93948200-93950600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr9:93948400-93950400	Enhancers	Skeletal Muscle Male	skeletal muscle
12	chr9:93948600-93949600	Enhancers	K562	blood
13	chr9:93948600-93949800	Enhancers	Hela-S3	cervix
14	chr9:93948600-93950200	Enhancers	Right Atrium	heart
15	chr9:93948600-93950400	Enhancers	Right Ventricle	heart
16	chr9:93948600-93950600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr9:93948600-93950600	Enhancers	Left Ventricle	heart
18	chr9:93948600-93950800	Enhancers	NHLF	lung
19	chr9:93948600-93951000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr9:93948800-93949400	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr9:93948800-93949600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
22	chr9:93948800-93949600	Enhancers	Esophagus	oesophagus
23	chr9:93948800-93949800	Enhancers	Primary monocytes fromperipheralblood	blood
24	chr9:93948800-93949800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr9:93948800-93949800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr9:93948800-93949800	Enhancers	Monocytes-CD14+_RO01746	blood
27	chr9:93948800-93949800	Enhancers	NHEK	skin
28	chr9:93948800-93950200	Enhancers	Colonic Mucosa	Colon
29	chr9:93948800-93950200	Enhancers	HUVEC	blood vessel
30	chr9:93948800-93950400	Enhancers	HMEC	breast
31	chr9:93948800-93950600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr9:93948800-93950600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr9:93948800-93950600	Enhancers	Fetal Muscle Leg	muscle
34	chr9:93948800-93950600	Enhancers	Placenta Amnion	Placenta Amnion
35	chr9:93948800-93950800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr9:93948800-93950800	Enhancers	Muscle Satellite Cultured Cells	--
37	chr9:93949000-93949200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr9:93949000-93949400	Enhancers	Primary hematopoietic stem cells	blood
39	chr9:93949000-93949400	Enhancers	Spleen	Spleen
40	chr9:93949000-93949800	Enhancers	Primary T helper cells PMA-I stimulated	--
41	chr9:93949000-93949800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
42	chr9:93949000-93950000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr9:93949000-93950000	Weak transcription	Psoas Muscle	Psoas
44	chr9:93949000-93950400	Enhancers	Adipose Nuclei	Adipose
45	chr9:93949000-93950400	Enhancers	Fetal Muscle Trunk	muscle
46	chr9:93949000-93950600	Enhancers	Stomach Mucosa	stomach
47	chr9:93949000-93950800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr9:93949000-93950800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr9:93949000-93950800	Enhancers	NH-A	brain
50	chr9:93949000-93950800	Enhancers	NHDF-Ad	bronchial

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