Variant report

Variant	rs10991835
Chromosome Location	chr9:93995591-93995592
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10991813	0.91[CEU][hapmap];0.82[AMR][1000 genomes]
rs10991816	0.90[CEU][hapmap];0.83[AMR][1000 genomes]
rs10991820	0.90[CEU][hapmap];0.88[YRI][hapmap];0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12236714	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12238485	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1848984	0.82[YRI][hapmap]
rs2281921	0.82[CHB][hapmap]
rs3884186	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs3914139	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7020997	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7035931	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7036028	0.95[CEU][hapmap];0.96[YRI][hapmap];0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9299391	0.91[CHB][hapmap]
rs9792456	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93970400-94005400	Weak transcription	Aorta	Aorta
2	chr9:93971000-94007800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr9:93971400-94009400	Weak transcription	Spleen	Spleen
4	chr9:93971800-94008000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr9:93972800-94009200	Weak transcription	Brain Germinal Matrix	brain
6	chr9:93973600-93995800	Weak transcription	Fetal Brain Female	brain
7	chr9:93975800-94005000	Weak transcription	Fetal Kidney	kidney
8	chr9:93976000-94002000	Weak transcription	Gastric	stomach
9	chr9:93980600-94007600	Weak transcription	Primary B cells from cord blood	blood
10	chr9:93981600-94002000	Weak transcription	Pancreas	Pancrea
11	chr9:93981600-94004200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr9:93981600-94008000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr9:93981600-94008000	Weak transcription	Esophagus	oesophagus
14	chr9:93982600-94008200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr9:93982800-94032400	Weak transcription	Ovary	ovary
16	chr9:93983000-94003000	Weak transcription	Right Ventricle	heart
17	chr9:93983000-94005600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
18	chr9:93983000-94008200	Weak transcription	Duodenum Mucosa	Duodenum
19	chr9:93983000-94009000	Weak transcription	Fetal Lung	lung
20	chr9:93983000-94027000	Weak transcription	Fetal Intestine Large	intestine
21	chr9:93983000-94054000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr9:93983200-94005400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr9:93983200-94015400	Weak transcription	Thymus	Thymus
24	chr9:93983200-94015800	Weak transcription	Rectal Mucosa Donor 31	rectum
25	chr9:93983200-94027800	Weak transcription	Adipose Nuclei	Adipose
26	chr9:93983800-94010800	Weak transcription	Stomach Smooth Muscle	stomach
27	chr9:93984000-94052200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr9:93984000-94054600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr9:93984200-94024000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr9:93984400-94026200	Weak transcription	Primary T cells from cord blood	blood
31	chr9:93986400-94001600	Weak transcription	Fetal Muscle Leg	muscle
32	chr9:93993400-94008400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr9:93995000-94001600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr9:93995400-93995600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
35	chr9:93995400-93995800	Strong transcription	Fetal Intestine Small	intestine
36	chr9:93995400-93995800	Strong transcription	Fetal Stomach	stomach
37	chr9:93995400-93996200	Strong transcription	HepG2	liver

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