Variant report

Variant	rs3914139
Chromosome Location	chr9:93963190-93963191
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10512206	0.91[ASN][1000 genomes]
rs10991813	0.95[CEU][hapmap];0.80[JPT][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10991816	0.95[CEU][hapmap];0.89[CHB][hapmap];0.85[JPT][hapmap];0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10991820	0.95[CEU][hapmap];0.90[CHB][hapmap];0.81[JPT][hapmap];0.92[YRI][hapmap];0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs10991826	0.90[ASN][1000 genomes]
rs10991835	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12236714	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12236715	0.91[ASN][1000 genomes]
rs12238485	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1848984	0.85[YRI][hapmap]
rs3884186	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59546704	0.91[ASN][1000 genomes]
rs7020997	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7025775	0.92[ASN][1000 genomes]
rs7026063	0.90[ASN][1000 genomes]
rs7035931	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7036028	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs773513	0.84[CHB][hapmap]
rs9792456	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93956400-93963200	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr9:93959800-93969600	Weak transcription	Gastric	stomach
3	chr9:93961000-93969400	Weak transcription	Osteobl	bone
4	chr9:93961000-93969800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr9:93961200-93964800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr9:93961200-93965000	Weak transcription	Fetal Lung	lung
7	chr9:93961200-93969200	Weak transcription	Liver	Liver
8	chr9:93961200-93969600	Weak transcription	Right Atrium	heart
9	chr9:93961200-93975600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr9:93962200-93963400	Enhancers	Muscle Satellite Cultured Cells	--
11	chr9:93962400-93963200	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr9:93962400-93965000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr9:93962400-93969800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr9:93962400-93969800	Weak transcription	K562	blood
15	chr9:93962600-93969600	Weak transcription	Stomach Mucosa	stomach
16	chr9:93963000-93963200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr9:93963000-93963200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
18	chr9:93963000-93963200	Enhancers	Rectal Mucosa Donor 29	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links