Variant report

Variant	rs7026063
Chromosome Location	chr9:93969462-93969463
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:93957714..93959439-chr9:93968900..93970567,2	MCF-7	breast:
2	chr9:93954809..93958074-chr9:93968864..93971962,3	MCF-7	breast:
3	chr9:93964370..93966727-chr9:93969107..93971883,2	K562	blood:
4	chr9:93966984..93969661-chr9:93974166..93977145,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AUH-6	chr9:93968457-93972581	ENSG00000273381.1

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10512206	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10991816	0.85[CHD][hapmap]
rs10991826	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12236714	0.91[ASN][1000 genomes]
rs12236715	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12238485	0.91[ASN][1000 genomes]
rs2281921	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3884186	0.93[ASN][1000 genomes]
rs3914139	0.90[ASN][1000 genomes]
rs59546704	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7020997	0.91[ASN][1000 genomes]
rs7025775	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7035931	0.91[ASN][1000 genomes]
rs7036028	0.87[ASW][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.90[ASN][1000 genomes]
rs7047354	0.92[AFR][1000 genomes]
rs9792456	0.93[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7026063	FAM120A	cis	parietal	SCAN
rs7026063	CENPP	cis	cerebellum	SCAN

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93959800-93969600	Weak transcription	Gastric	stomach
2	chr9:93961000-93969800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr9:93961200-93969600	Weak transcription	Right Atrium	heart
4	chr9:93961200-93975600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr9:93962400-93969800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr9:93962400-93969800	Weak transcription	K562	blood
7	chr9:93962600-93969600	Weak transcription	Stomach Mucosa	stomach
8	chr9:93963200-93969800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr9:93965400-93969600	Weak transcription	Fetal Lung	lung
10	chr9:93965400-93969600	Weak transcription	Psoas Muscle	Psoas
11	chr9:93968000-93969800	Enhancers	HepG2	liver
12	chr9:93968600-93971400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr9:93968800-93969600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr9:93968800-93970000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
15	chr9:93968800-93970200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr9:93968800-93970400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr9:93968800-93970400	Enhancers	NHEK	skin
18	chr9:93968800-93971000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr9:93969000-93969600	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr9:93969200-93969600	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr9:93969200-93969600	Enhancers	Liver	Liver
22	chr9:93969200-93969800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr9:93969200-93970000	Enhancers	Primary B cells from cord blood	blood
24	chr9:93969200-93970000	Enhancers	NHDF-Ad	bronchial
25	chr9:93969200-93971000	Enhancers	Cortex derived primary cultured neurospheres	brain
26	chr9:93969200-93971400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr9:93969200-93971400	Enhancers	Fetal Intestine Large	intestine
28	chr9:93969400-93969600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
29	chr9:93969400-93969800	Enhancers	Duodenum Smooth Muscle	Duodenum
30	chr9:93969400-93969800	Enhancers	Skeletal Muscle Female	skeletal muscle
31	chr9:93969400-93969800	Enhancers	GM12878-XiMat	blood
32	chr9:93969400-93970000	Enhancers	Primary hematopoietic stem cells	blood
33	chr9:93969400-93970000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr9:93969400-93970000	Enhancers	Brain Hippocampus Middle	brain
35	chr9:93969400-93970000	Enhancers	Osteobl	bone
36	chr9:93969400-93970200	Enhancers	Breast Myoepithelial Primary Cells	Breast
37	chr9:93969400-93970200	Enhancers	Primary T cells from cord blood	blood
38	chr9:93969400-93970200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
39	chr9:93969400-93970200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr9:93969400-93970400	Enhancers	NHLF	lung
41	chr9:93969400-93970800	Enhancers	HSMMtube	muscle
42	chr9:93969400-93971200	Enhancers	Primary T helper naive cells from peripheral blood	blood
43	chr9:93969400-93971400	Enhancers	Placenta	Placenta
44	chr9:93969400-93971600	Enhancers	Sigmoid Colon	Sigmoid Colon
45	chr9:93969400-93971800	Enhancers	Primary B cells from peripheral blood	blood
46	chr9:93969400-93972200	Enhancers	Primary monocytes fromperipheralblood	blood

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