Variant report

Variant	rs7025775
Chromosome Location	chr9:93963953-93963954
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10512206	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10991816	0.87[CHD][hapmap]
rs10991826	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12236714	0.92[ASN][1000 genomes]
rs12236715	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12238485	0.92[ASN][1000 genomes]
rs2281921	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3884186	0.90[ASN][1000 genomes]
rs3914139	0.92[ASN][1000 genomes]
rs59546704	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7020997	0.92[ASN][1000 genomes]
rs7026063	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7035931	0.92[ASN][1000 genomes]
rs7036028	0.87[ASW][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.90[ASN][1000 genomes]
rs7047354	0.93[AFR][1000 genomes]
rs9792456	0.90[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs7025775	FAM120A	cis	parietal	SCAN
rs7025775	CENPP	cis	cerebellum	SCAN

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93959800-93969600	Weak transcription	Gastric	stomach
2	chr9:93961000-93969400	Weak transcription	Osteobl	bone
3	chr9:93961000-93969800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr9:93961200-93964800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr9:93961200-93965000	Weak transcription	Fetal Lung	lung
6	chr9:93961200-93969200	Weak transcription	Liver	Liver
7	chr9:93961200-93969600	Weak transcription	Right Atrium	heart
8	chr9:93961200-93975600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:93962400-93965000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr9:93962400-93969800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr9:93962400-93969800	Weak transcription	K562	blood
12	chr9:93962600-93969600	Weak transcription	Stomach Mucosa	stomach
13	chr9:93963200-93969800	Weak transcription	Rectal Mucosa Donor 29	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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