Variant report

Variant	rs10512206
Chromosome Location	chr9:93961118-93961119
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:93959750..93961882-chr9:94121877..94124140,2	K562	blood:
2	chr9:93954745..93957356-chr9:93959373..93965297,8	MCF-7	breast:
3	chr9:93959205..93961685-chr9:93970051..93972978,3	MCF-7	breast:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-SYK-5	chr9:93960204-93961711	NONHSAT133124
2	lnc-SYK-5	chr9:93960473-93961359	ucscGeneNc_uc004arq_1

Variant related genes	Relation type
ENSG00000273381	Chromatin interaction

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10991816	0.84[CHD][hapmap]
rs10991826	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12236714	0.93[ASN][1000 genomes]
rs12236715	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12238485	0.93[ASN][1000 genomes]
rs2281921	0.93[CEU][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs3884186	0.91[ASN][1000 genomes]
rs3914139	0.91[ASN][1000 genomes]
rs59546704	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7020997	0.93[ASN][1000 genomes]
rs7025775	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7026063	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7035931	0.93[ASN][1000 genomes]
rs7036028	0.87[ASW][hapmap];0.90[CHB][hapmap];0.92[CHD][hapmap];0.91[ASN][1000 genomes]
rs7047354	0.91[AFR][1000 genomes]
rs9792456	0.91[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10512206	CENPP	cis	cerebellum	SCAN
rs10512206	FAM120A	cis	parietal	SCAN

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93956400-93961600	Enhancers	Fetal Intestine Large	intestine
2	chr9:93956400-93963200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr9:93956600-93961200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr9:93956600-93961200	Enhancers	Fetal Lung	lung
5	chr9:93956600-93961200	Enhancers	NHDF-Ad	bronchial
6	chr9:93956600-93961400	Enhancers	Colon Smooth Muscle	Colon
7	chr9:93956600-93961400	Enhancers	Fetal Intestine Small	intestine
8	chr9:93956600-93962000	Weak transcription	Aorta	Aorta
9	chr9:93956600-93962600	Enhancers	Stomach Mucosa	stomach
10	chr9:93956800-93961400	Enhancers	NHLF	lung
11	chr9:93956800-93962400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr9:93956800-93962400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
13	chr9:93957000-93962400	Enhancers	Rectal Mucosa Donor 31	rectum
14	chr9:93957600-93962400	Enhancers	Skeletal Muscle Female	skeletal muscle
15	chr9:93957800-93961200	Enhancers	Adipose Nuclei	Adipose
16	chr9:93957800-93962000	Weak transcription	Primary B cells from peripheral blood	blood
17	chr9:93958000-93961200	Enhancers	Liver	Liver
18	chr9:93958400-93961200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr9:93958600-93961200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr9:93958600-93961400	Enhancers	HMEC	breast
21	chr9:93958600-93962400	Enhancers	K562	blood
22	chr9:93959000-93961200	Enhancers	Rectal Smooth Muscle	rectum
23	chr9:93959000-93961800	Weak transcription	Psoas Muscle	Psoas
24	chr9:93959000-93962000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr9:93959400-93961200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
26	chr9:93959600-93961400	Enhancers	ES-I3 Cell Line	embryonic stem cell
27	chr9:93959600-93963000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr9:93959800-93961200	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr9:93959800-93962400	Enhancers	Primary neutrophils fromperipheralblood	blood
30	chr9:93959800-93969600	Weak transcription	Gastric	stomach
31	chr9:93960000-93961200	Enhancers	HUES6 Cell Line	embryonic stem cell
32	chr9:93960000-93961200	Enhancers	iPS-15b Cell Line	embryonic stem cell
33	chr9:93960200-93961200	Enhancers	Duodenum Mucosa	Duodenum
34	chr9:93960200-93962000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr9:93960200-93962400	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr9:93960400-93961200	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr9:93960400-93961800	Enhancers	Monocytes-CD14+_RO01746	blood
38	chr9:93960400-93962400	Enhancers	Hela-S3	cervix
39	chr9:93960600-93961200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:93960600-93961200	Enhancers	Duodenum Smooth Muscle	Duodenum
41	chr9:93960600-93961800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
42	chr9:93960600-93962000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr9:93960800-93961200	Enhancers	H9 Cell Line	embryonic stem cell
44	chr9:93960800-93961200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr9:93960800-93961200	Enhancers	Right Atrium	heart
46	chr9:93960800-93962200	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr9:93960800-93962400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr9:93960800-93962400	Enhancers	Small Intestine	intestine
49	chr9:93961000-93961200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
50	chr9:93961000-93961200	Enhancers	Stomach Smooth Muscle	stomach

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