Variant report

Variant	rs2281921
Chromosome Location	chr9:93983537-93983538
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MXI1	chr9:93982421-93984804	IMR90	lung:	n/a	n/a

Variant related genes	Relation type
AUH	TF binding region

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10512206	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10991826	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12236715	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs59546704	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7025775	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7026063	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893570	chr9:93973938-94148084	Enhancers Genic enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv482877	chr9:93979351-94157734	Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:93970200-93984000	Weak transcription	K562	blood
2	chr9:93970400-94005400	Weak transcription	Aorta	Aorta
3	chr9:93970800-93983600	Weak transcription	Brain Substantia Nigra	brain
4	chr9:93970800-93983800	Weak transcription	Brain Angular Gyrus	brain
5	chr9:93970800-93984200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:93970800-93985200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr9:93971000-93984200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr9:93971000-94007800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr9:93971200-93983800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr9:93971400-93983800	Weak transcription	Dnd41	blood
11	chr9:93971400-93984200	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr9:93971400-93984400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr9:93971400-94009400	Weak transcription	Spleen	Spleen
14	chr9:93971600-93983800	Weak transcription	Psoas Muscle	Psoas
15	chr9:93971800-94008000	Weak transcription	Primary B cells from peripheral blood	blood
16	chr9:93972800-94009200	Weak transcription	Brain Germinal Matrix	brain
17	chr9:93973000-93984000	Weak transcription	Fetal Brain Male	brain
18	chr9:93973000-93984600	Weak transcription	Small Intestine	intestine
19	chr9:93973600-93995800	Weak transcription	Fetal Brain Female	brain
20	chr9:93974800-93983800	Weak transcription	A549	lung
21	chr9:93975000-93983800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr9:93975400-93985000	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr9:93975800-93983800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
24	chr9:93975800-94005000	Weak transcription	Fetal Kidney	kidney
25	chr9:93976000-94002000	Weak transcription	Gastric	stomach
26	chr9:93977000-93983800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr9:93977200-93984400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr9:93977400-93985400	Weak transcription	Hela-S3	cervix
29	chr9:93977600-93983800	Weak transcription	NHLF	lung
30	chr9:93979200-93995400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr9:93979800-93984000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr9:93979800-93984400	Strong transcription	Primary T cells from cord blood	blood
33	chr9:93980200-93984000	Weak transcription	H9 Cell Line	embryonic stem cell
34	chr9:93980200-93984400	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr9:93980200-93994400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
36	chr9:93980400-93985400	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr9:93980600-93984200	Weak transcription	Fetal Thymus	thymus
38	chr9:93980600-94007600	Weak transcription	Primary B cells from cord blood	blood
39	chr9:93981600-93985400	Weak transcription	Lung	lung
40	chr9:93981600-93986200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
41	chr9:93981600-94002000	Weak transcription	Pancreas	Pancrea
42	chr9:93981600-94004200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr9:93981600-94008000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr9:93981600-94008000	Weak transcription	Esophagus	oesophagus
45	chr9:93982400-93984400	Enhancers	Right Atrium	heart
46	chr9:93982400-93984400	Enhancers	Osteobl	bone
47	chr9:93982600-93983600	Enhancers	Fetal Heart	heart
48	chr9:93982600-93984200	Weak transcription	Brain Hippocampus Middle	brain
49	chr9:93982600-93984200	Strong transcription	HepG2	liver
50	chr9:93982600-94008200	Weak transcription	Brain Inferior Temporal Lobe	brain

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