Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:95691380..95693940-chr9:95694978..95697787,4	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10992526	1.00[YRI][hapmap]
rs10992544	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10992554	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10992556	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10992557	1.00[CEU][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10992580	0.85[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap]
rs10992587	0.85[CEU][hapmap]
rs10992599	0.85[CEU][hapmap]
rs12377272	1.00[EUR][1000 genomes]
rs12378192	1.00[EUR][1000 genomes]
rs12378898	1.00[EUR][1000 genomes]
rs12380201	0.84[AFR][1000 genomes]
rs12380291	1.00[GIH][hapmap];1.00[MEX][hapmap]
rs7043408	0.82[CEU][hapmap]
rs72741026	0.88[EUR][1000 genomes]
rs72741032	1.00[EUR][1000 genomes]
rs72741034	1.00[EUR][1000 genomes]
rs72741039	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72741043	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72741045	0.90[EUR][1000 genomes]
rs72741049	0.84[AFR][1000 genomes];0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10992543	FGD3	cis	multi-tissue	Pritchard

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95691600-95695400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr9:95691800-95697000	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr9:95694200-95696400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr9:95694800-95700000	Weak transcription	Primary monocytes fromperipheralblood	blood

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