Variant report

Variant	rs10992557
Chromosome Location	chr9:95729825-95729826
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10992543	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10992544	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10992554	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10992556	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10992580	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs10992587	1.00[CEU][hapmap]
rs10992599	1.00[CEU][hapmap]
rs12377272	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12377562	1.00[CEU][hapmap]
rs12378192	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12378898	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12380201	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs12380789	0.84[AFR][1000 genomes]
rs7043408	1.00[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs72741032	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72741034	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72741039	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72741043	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72741045	1.00[EUR][1000 genomes]
rs72741049	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv526296	chr9:95708192-96030392	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95715400-95732200	Weak transcription	Fetal Brain Female	brain
2	chr9:95720000-95731400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr9:95725600-95734000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
4	chr9:95726400-95730200	Active TSS	Primary T killer memory cells from peripheral blood	blood
5	chr9:95726600-95730600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr9:95726600-95731400	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr9:95726800-95731200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:95726800-95731200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:95726800-95732200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr9:95728000-95732400	Weak transcription	Left Ventricle	heart
11	chr9:95728000-95733800	Weak transcription	Right Atrium	heart
12	chr9:95728200-95731200	Weak transcription	H9 Cell Line	embryonic stem cell
13	chr9:95728200-95739600	Weak transcription	Fetal Stomach	stomach
14	chr9:95728400-95730600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr9:95728400-95731200	Weak transcription	H1 Cell Line	embryonic stem cell
16	chr9:95728400-95731200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr9:95728400-95732400	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr9:95728600-95730600	Weak transcription	Brain Germinal Matrix	brain
19	chr9:95728600-95731000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr9:95728600-95732200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr9:95728600-95732200	Weak transcription	Brain Anterior Caudate	brain
22	chr9:95728600-95732600	Weak transcription	Brain Cingulate Gyrus	brain
23	chr9:95728600-95733200	Genic enhancers	Spleen	Spleen
24	chr9:95728800-95730000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
25	chr9:95728800-95730400	Weak transcription	Duodenum Mucosa	Duodenum
26	chr9:95728800-95731000	Weak transcription	HUES6 Cell Line	embryonic stem cell
27	chr9:95728800-95731200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:95728800-95731400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr9:95728800-95732800	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr9:95728800-95732800	Weak transcription	Brain Substantia Nigra	brain
31	chr9:95728800-95733600	Weak transcription	Brain Hippocampus Middle	brain
32	chr9:95728800-95733800	Genic enhancers	Primary B cells from peripheral blood	blood
33	chr9:95728800-95739400	Weak transcription	Gastric	stomach
34	chr9:95728800-95739600	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr9:95728800-95740600	Weak transcription	Small Intestine	intestine
36	chr9:95729000-95730200	Weak transcription	Liver	Liver
37	chr9:95729000-95730200	Weak transcription	Placenta	Placenta
38	chr9:95729000-95730600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr9:95729000-95731200	Weak transcription	Pancreas	Pancrea
40	chr9:95729000-95731800	Weak transcription	Esophagus	oesophagus
41	chr9:95729000-95731800	Weak transcription	Lung	lung
42	chr9:95729000-95732000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr9:95729000-95733800	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr9:95729000-95734000	Genic enhancers	Primary monocytes fromperipheralblood	blood
45	chr9:95729000-95735000	Weak transcription	Adipose Nuclei	Adipose
46	chr9:95729000-95739400	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr9:95729000-95741400	Weak transcription	Right Ventricle	heart
48	chr9:95729200-95730200	Weak transcription	Primary hematopoietic stem cells	blood
49	chr9:95729200-95730200	Weak transcription	GM12878-XiMat	blood
50	chr9:95729200-95730600	Flanking Active TSS	Primary T cells fromperipheralblood	blood

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