Variant report

Variant	rs12377272
Chromosome Location	chr9:95699131-95699132
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10992543	1.00[EUR][1000 genomes]
rs10992544	1.00[EUR][1000 genomes]
rs10992554	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10992556	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10992557	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12378192	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12378898	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72741026	0.88[EUR][1000 genomes]
rs72741032	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72741034	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72741039	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72741043	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72741045	0.90[EUR][1000 genomes]
rs72741049	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831654	chr9:95542920-95720961	ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12377272	FGD3	cis	Whole Blood	GTEx

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:95694800-95700000	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr9:95696400-95700000	Weak transcription	Primary neutrophils fromperipheralblood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links