Variant report

Variant	rs10992720
Chromosome Location	chr9:96153894-96153895
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12555823	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2266010	1.00[CHB][hapmap];0.92[JPT][hapmap];0.98[ASN][1000 genomes]
rs2841683	0.86[CHB][hapmap];0.92[JPT][hapmap];0.94[ASN][1000 genomes]
rs4255201	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs55893789	0.82[ASN][1000 genomes]
rs60256601	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96149800-96154200	Enhancers	Rectal Mucosa Donor 31	rectum
2	chr9:96153200-96154200	Enhancers	H1 Cell Line	embryonic stem cell
3	chr9:96153200-96155200	Enhancers	Colonic Mucosa	Colon
4	chr9:96153200-96156200	Enhancers	Placenta	Placenta
5	chr9:96153400-96161000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:96153600-96154200	Bivalent Enhancer	HepG2	liver
7	chr9:96153600-96154800	Enhancers	Fetal Intestine Large	intestine
8	chr9:96153600-96155400	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr9:96153600-96156000	Enhancers	Sigmoid Colon	Sigmoid Colon
10	chr9:96153800-96154200	Enhancers	Small Intestine	intestine
11	chr9:96153800-96154600	Enhancers	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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