Variant report

Variant	rs55893789
Chromosome Location	chr9:96170890-96170891
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10117236	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10217595	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10992720	0.82[ASN][1000 genomes]
rs12555047	0.89[ASN][1000 genomes]
rs2266010	0.81[ASN][1000 genomes]
rs2841683	0.85[ASN][1000 genomes]
rs4255201	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55766809	0.89[ASN][1000 genomes]
rs55814723	0.82[ASN][1000 genomes]
rs55846141	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7863760	0.86[AMR][1000 genomes];0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs55893789	RP11-165J3.6	cis	Esophagus Muscularis	GTEx
rs55893789	RP11-165J3.6	cis	Skin Sun Exposed Lower leg	GTEx
rs55893789	RP11-165J3.6	cis	Thyroid	GTEx

Chromatin state (count:0 , 50 per page) page:

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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