Variant report

Variant	rs55766809
Chromosome Location	chr9:96190718-96190719
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10117236	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10217595	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs12335532	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12555047	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3933796	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs3933797	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4255201	0.83[ASN][1000 genomes]
rs55846141	0.94[ASN][1000 genomes]
rs55893789	0.89[ASN][1000 genomes]
rs7859267	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7863760	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs55766809	RP11-165J3.6	cis	Esophagus Muscularis	GTEx
rs55766809	RP11-165J3.6	cis	Thyroid	GTEx
rs55766809	RP11-165J3.6	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96185800-96208200	Weak transcription	Gastric	stomach
2	chr9:96186000-96208200	Weak transcription	Pancreas	Pancrea
3	chr9:96186600-96208200	Weak transcription	Lung	lung
4	chr9:96190400-96190800	Enhancers	Fetal Intestine Large	intestine
5	chr9:96190600-96192800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr9:96190600-96196600	Weak transcription	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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