Variant report

Variant	rs3933796
Chromosome Location	chr9:96185405-96185406
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12335532	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12555047	0.84[EUR][1000 genomes]
rs3933797	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55766809	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7859267	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs3933796	RP11-165J3.6	cis	Thyroid	GTEx
rs3933796	RP11-165J3.6	cis	Esophagus Muscularis	GTEx
rs3933796	RP11-165J3.6	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96182600-96185600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:96182600-96185600	Weak transcription	Gastric	stomach
3	chr9:96184600-96186200	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr9:96185200-96185800	Enhancers	Fetal Brain Female	brain
5	chr9:96185200-96186000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr9:96185200-96186000	Enhancers	Fetal Stomach	stomach
7	chr9:96185400-96185600	Flanking Active TSS	Colon Smooth Muscle	Colon
8	chr9:96185400-96185600	Enhancers	Small Intestine	intestine
9	chr9:96185400-96186000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr9:96185400-96186000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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