Variant report

Variant	rs7859267
Chromosome Location	chr9:96189109-96189110
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10429558	0.88[CHB][hapmap]
rs11975	0.88[CHB][hapmap]
rs12335532	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12341488	0.84[CHB][hapmap]
rs12555047	0.84[EUR][1000 genomes]
rs3815563	0.90[CEU][hapmap];0.88[CHB][hapmap]
rs3933796	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3933797	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55766809	0.98[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6479494	0.84[CHB][hapmap]
rs7025805	0.84[CHB][hapmap]
rs7035657	0.84[CHB][hapmap]
rs7036984	0.84[CHB][hapmap]
rs7044283	0.82[CHB][hapmap]
rs7853605	0.90[CEU][hapmap];0.84[CHB][hapmap]
rs7857183	0.88[CHB][hapmap]
rs7860098	0.88[CHB][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs7859267	RP11-165J3.6	cis	Esophagus Muscularis	GTEx
rs7859267	RP11-165J3.6	cis	Thyroid	GTEx
rs7859267	RP11-165J3.6	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96185800-96208200	Weak transcription	Gastric	stomach
2	chr9:96186000-96208200	Weak transcription	Pancreas	Pancrea
3	chr9:96186600-96208200	Weak transcription	Lung	lung

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links