Variant report

Variant	rs7035657
Chromosome Location	chr9:96197051-96197052
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96194036..96195679-chr9:96195790..96198245,2	MCF-7	breast:
2	chr9:96191335..96193739-chr9:96195516..96197306,2	K562	blood:
3	chr9:96196696..96199442-chr9:96211213..96213936,2	K562	blood:

Variant related genes	Relation type
ENSG00000237385	Chromatin interaction
ENSG00000188938	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 9 )

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10429558	0.90[CHB][hapmap];1.00[JPT][hapmap]
rs11975	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs12341488	0.80[CEU][hapmap];0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12554020	0.83[JPT][hapmap]
rs12554164	0.80[CEU][hapmap]
rs16909150	0.80[CEU][hapmap]
rs16909158	0.80[CEU][hapmap]
rs3815563	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3897285	0.83[YRI][hapmap]
rs4255201	0.80[CEU][hapmap]
rs4552973	0.83[JPT][hapmap];0.86[MEX][hapmap];0.83[TSI][hapmap];0.81[AMR][1000 genomes]
rs59483310	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs59582399	0.83[AMR][1000 genomes]
rs6479482	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6479483	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6479487	0.82[YRI][hapmap];0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6479494	0.80[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[TSI][hapmap]
rs7020459	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7023933	0.83[ASN][1000 genomes]
rs7025805	0.87[ASW][hapmap];0.90[CEU][hapmap];0.90[CHB][hapmap];0.90[CHD][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7028729	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7036984	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.93[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7048853	0.86[AMR][1000 genomes]
rs7850322	0.81[AMR][1000 genomes]
rs7853605	0.94[ASW][hapmap];0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.82[LWK][hapmap];0.93[MEX][hapmap];0.91[MKK][hapmap];0.87[TSI][hapmap];0.89[YRI][hapmap];0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7857183	0.80[CEU][hapmap];0.90[CHB][hapmap];1.00[JPT][hapmap]
rs7859267	0.84[CHB][hapmap]
rs7860098	0.80[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7862998	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:9)

SNP	Gene	Cis/trans	Tissue	Source
rs7035657	RP11-165J3.6	cis	Nerve Tibial	GTEx
rs7035657	FANCC	cis	cerebellum	SCAN
rs7035657	RP11-165J3.6	cis	Esophagus Muscularis	GTEx
rs7035657	RP11-165J3.6	cis	Artery Tibial	GTEx
rs7035657	SHC3	cis	cerebellum	SCAN
rs7035657	OGN	cis	parietal	SCAN
rs7035657	ANKRD19	cis	cerebellum	SCAN
rs7035657	RP11-165J3.6	cis	Skin Sun Exposed Lower leg	GTEx
rs7035657	RP11-165J3.6	cis	Thyroid	GTEx

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96185800-96208200	Weak transcription	Gastric	stomach
2	chr9:96186000-96208200	Weak transcription	Pancreas	Pancrea
3	chr9:96186600-96208200	Weak transcription	Lung	lung
4	chr9:96194000-96207800	Weak transcription	Thymus	Thymus
5	chr9:96194200-96207600	Weak transcription	Primary T cells from cord blood	blood
6	chr9:96194400-96208000	Weak transcription	Primary B cells from peripheral blood	blood
7	chr9:96194400-96208000	Weak transcription	Fetal Intestine Large	intestine
8	chr9:96194400-96208400	Weak transcription	Fetal Intestine Small	intestine
9	chr9:96194400-96208400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr9:96194400-96208400	Weak transcription	Small Intestine	intestine
11	chr9:96194400-96208800	Weak transcription	Brain Anterior Caudate	brain
12	chr9:96194400-96209200	Weak transcription	Fetal Kidney	kidney
13	chr9:96194600-96208200	Weak transcription	Primary T helper cells fromperipheralblood	blood
14	chr9:96195400-96198600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr9:96195400-96208200	Weak transcription	Primary T cells fromperipheralblood	blood
16	chr9:96195400-96208200	Weak transcription	Left Ventricle	heart
17	chr9:96195600-96207800	Weak transcription	GM12878-XiMat	blood
18	chr9:96195600-96208400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
19	chr9:96196800-96198800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr9:96196800-96208400	Weak transcription	Fetal Lung	lung
21	chr9:96196800-96209600	Weak transcription	Psoas Muscle	Psoas
22	chr9:96197000-96197800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr9:96197000-96198400	Active TSS	Placenta	Placenta
24	chr9:96197000-96208200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr9:96197000-96212400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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