Variant report

Variant	rs3897285
Chromosome Location	chr9:96228298-96228299
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96228099..96230540-chr9:96327402..96330040,2	K562	blood:
2	chr9:96224548..96228951-chr9:96229326..96235685,10	K562	blood:
3	chr9:96225647..96228632-chr9:96240756..96242755,2	K562	blood:
4	chr9:96224590..96228623-chr9:96232472..96235685,5	K562	blood:
5	chr9:96226992..96229421-chr9:96235816..96238058,2	K562	blood:

Variant related genes	Relation type
ENSG00000263875	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10046907	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10122014	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs10124517	0.86[ASN][1000 genomes]
rs10512224	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10512226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12552189	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12553275	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1317260	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs1331588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16909211	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2250236	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs2254715	0.82[JPT][hapmap]
rs28403269	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2994366	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2994368	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs4146138	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs4573340	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55649770	0.81[EUR][1000 genomes]
rs55702483	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55812345	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56375911	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57303681	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57631285	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58790127	0.90[EUR][1000 genomes]
rs59326991	0.96[AFR][1000 genomes]
rs60212988	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60253984	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60650773	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61340241	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6479483	0.93[AFR][1000 genomes]
rs7020195	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7020459	0.93[AFR][1000 genomes]
rs7025805	1.00[YRI][hapmap];0.96[AFR][1000 genomes]
rs7033849	0.85[CHB][hapmap]
rs7035657	0.83[YRI][hapmap]
rs7036984	0.83[YRI][hapmap]
rs7038564	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7044283	1.00[CHB][hapmap]
rs73651204	0.86[EUR][1000 genomes]
rs73651206	0.90[EUR][1000 genomes]
rs73651227	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73651228	0.90[EUR][1000 genomes]
rs73651229	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73651232	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73651246	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73651248	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7854217	0.90[EUR][1000 genomes]
rs7854349	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7857165	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs7861929	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7862998	0.94[AFR][1000 genomes]
rs7874126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs914417	0.85[CHB][hapmap]
rs9299409	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs999326	0.90[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96216200-96228800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:96216400-96230600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:96216600-96231200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr9:96216600-96232800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr9:96216800-96230600	Weak transcription	Fetal Stomach	stomach
6	chr9:96216800-96231400	Enhancers	Primary T cells from cord blood	blood
7	chr9:96217200-96239800	Weak transcription	Fetal Brain Female	brain
8	chr9:96217400-96230800	Weak transcription	HSMM	muscle
9	chr9:96217800-96229000	Weak transcription	Brain Germinal Matrix	brain
10	chr9:96219200-96229000	Weak transcription	NH-A	brain
11	chr9:96219200-96233400	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr9:96220800-96233200	Enhancers	Primary T helper cells PMA-I stimulated	--
13	chr9:96221200-96229000	Weak transcription	Osteobl	bone
14	chr9:96221600-96230600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr9:96222000-96228600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr9:96222200-96228800	Weak transcription	NHLF	lung
17	chr9:96222200-96230600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr9:96222600-96232200	Enhancers	Primary T killer memory cells from peripheral blood	blood
19	chr9:96222800-96230000	Enhancers	Primary hematopoietic stem cells	blood
20	chr9:96222800-96231600	Enhancers	Primary hematopoietic stem cells short term culture	blood
21	chr9:96223600-96228600	Weak transcription	Hela-S3	cervix
22	chr9:96223800-96228800	Weak transcription	NHDF-Ad	bronchial
23	chr9:96224400-96229000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr9:96224400-96232600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr9:96224400-96233600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr9:96224800-96232000	Enhancers	Primary T helper naive cells from peripheral blood	blood
27	chr9:96224800-96232000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
28	chr9:96225000-96229400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr9:96225000-96233600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
30	chr9:96225200-96228800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
31	chr9:96225200-96228800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr9:96225400-96229000	Weak transcription	HMEC	breast
33	chr9:96225400-96230200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr9:96225600-96228800	Enhancers	HepG2	liver
35	chr9:96225600-96229000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
36	chr9:96225600-96230000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
37	chr9:96225600-96230400	Enhancers	Rectal Mucosa Donor 29	rectum
38	chr9:96225600-96231200	Enhancers	Stomach Mucosa	stomach
39	chr9:96225800-96230000	Enhancers	Primary B cells from cord blood	blood
40	chr9:96225800-96230400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr9:96225800-96231200	Enhancers	Rectal Mucosa Donor 31	rectum
42	chr9:96225800-96231600	Enhancers	HUES64 Cell Line	embryonic stem cell
43	chr9:96225800-96231600	Enhancers	Brain Substantia Nigra	brain
44	chr9:96225800-96231800	Enhancers	Primary B cells from peripheral blood	blood
45	chr9:96226000-96229400	Enhancers	Duodenum Mucosa	Duodenum
46	chr9:96226000-96230000	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr9:96226000-96231800	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr9:96226000-96233800	Enhancers	Cortex derived primary cultured neurospheres	brain
49	chr9:96226000-96233800	Enhancers	Small Intestine	intestine
50	chr9:96226200-96231200	Enhancers	Duodenum Smooth Muscle	Duodenum

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