Variant report

Variant	rs57631285
Chromosome Location	chr9:96274167-96274168
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96212256..96214760-chr9:96273063..96275647,3	MCF-7	breast:
2	chr9:96257222..96259306-chr9:96272126..96274228,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000048828	Chromatin interaction
ENSG00000188938	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10046907	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10124517	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10512224	0.86[EUR][1000 genomes]
rs10512226	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12552189	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12553275	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1331588	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs16909211	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1931372	0.81[EUR][1000 genomes]
rs28403269	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3897285	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4573340	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4743916	0.81[EUR][1000 genomes]
rs4743920	0.81[EUR][1000 genomes]
rs4744229	0.81[EUR][1000 genomes]
rs55649770	0.81[EUR][1000 genomes]
rs55702483	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55812345	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56375911	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs57303681	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58790127	0.90[EUR][1000 genomes]
rs60212988	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60253984	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60610533	0.82[ASN][1000 genomes]
rs60650773	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61340241	0.94[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6479479	0.81[EUR][1000 genomes]
rs7020195	0.90[EUR][1000 genomes]
rs7038564	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73651204	0.86[EUR][1000 genomes]
rs73651206	0.90[EUR][1000 genomes]
rs73651227	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73651228	0.90[EUR][1000 genomes]
rs73651229	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73651232	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73651246	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73651248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7854217	0.90[EUR][1000 genomes]
rs7854349	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7861929	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7874126	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs999326	0.90[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
2	chr9:96243000-96288000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:96260400-96275600	Weak transcription	Esophagus	oesophagus
4	chr9:96260800-96290800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr9:96262200-96289000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr9:96263200-96285800	Weak transcription	H9 Cell Line	embryonic stem cell
7	chr9:96263200-96287600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:96263200-96290200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr9:96263400-96289000	Weak transcription	Fetal Kidney	kidney
10	chr9:96263600-96275400	Weak transcription	Brain Germinal Matrix	brain
11	chr9:96263600-96280200	Weak transcription	Placenta Amnion	Placenta Amnion
12	chr9:96264000-96275600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr9:96264000-96280400	Weak transcription	Colonic Mucosa	Colon
14	chr9:96264000-96281600	Weak transcription	Aorta	Aorta
15	chr9:96264000-96286600	Weak transcription	NH-A	brain
16	chr9:96264200-96275400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr9:96264200-96281800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr9:96264200-96288400	Weak transcription	HSMMtube	muscle
19	chr9:96265400-96275400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr9:96265800-96275600	Weak transcription	Cortex derived primary cultured neurospheres	brain
21	chr9:96265800-96278400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
22	chr9:96265800-96286200	Weak transcription	HUVEC	blood vessel
23	chr9:96265800-96286400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
24	chr9:96266000-96275600	Weak transcription	Fetal Brain Female	brain
25	chr9:96266000-96279800	Weak transcription	HSMM	muscle
26	chr9:96266600-96275600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
27	chr9:96266600-96279200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr9:96266800-96274200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr9:96267200-96275200	Weak transcription	NHEK	skin
30	chr9:96267200-96276000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr9:96267200-96279200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
32	chr9:96267200-96279800	Weak transcription	NHDF-Ad	bronchial
33	chr9:96268000-96278600	Weak transcription	Liver	Liver
34	chr9:96268000-96286400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr9:96268400-96275600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr9:96268400-96276400	Enhancers	Primary monocytes fromperipheralblood	blood
37	chr9:96268400-96279200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr9:96268600-96274600	Weak transcription	Primary hematopoietic stem cells	blood
39	chr9:96268600-96279200	Weak transcription	Hela-S3	cervix
40	chr9:96268600-96279800	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr9:96268600-96282200	Weak transcription	Osteobl	bone
42	chr9:96268800-96278800	Weak transcription	Stomach Smooth Muscle	stomach
43	chr9:96269600-96274200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr9:96270200-96278400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr9:96270400-96275600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
46	chr9:96270400-96279200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
47	chr9:96270800-96275600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr9:96270800-96275600	Weak transcription	GM12878-XiMat	blood
49	chr9:96270800-96285400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
50	chr9:96270800-96291600	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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