Variant report

Variant	rs12553275
Chromosome Location	chr9:96220594-96220595
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96220347..96222637-chr9:96242128..96243998,2	MCF-7	breast:
2	chr9:96220139..96221974-chr9:96287391..96289442,3	MCF-7	breast:
3	chr9:96220469..96222711-chr9:96337665..96339518,2	MCF-7	breast:
4	chr9:95963731..95965841-chr9:96218662..96220646,2	MCF-7	breast:
5	chr9:96219136..96220997-chr9:96281166..96283983,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10046907	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10124517	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10512224	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10512226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12552189	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1331588	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16909211	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1889338	0.86[EUR][1000 genomes]
rs1931369	0.86[EUR][1000 genomes]
rs1931372	0.81[EUR][1000 genomes]
rs2151714	0.86[EUR][1000 genomes]
rs28403269	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35356734	0.80[AMR][1000 genomes]
rs3897285	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4469524	0.86[EUR][1000 genomes]
rs4548243	0.86[EUR][1000 genomes]
rs4573340	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4743916	0.81[EUR][1000 genomes]
rs4743920	0.81[EUR][1000 genomes]
rs4744229	0.81[EUR][1000 genomes]
rs55649770	0.90[EUR][1000 genomes]
rs55702483	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55812345	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56375911	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57303681	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57631285	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58790127	1.00[EUR][1000 genomes]
rs60212988	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60253984	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60610533	0.84[AMR][1000 genomes]
rs60650773	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61340241	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6479479	0.81[EUR][1000 genomes]
rs6479480	0.86[EUR][1000 genomes]
rs7020195	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7038564	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73651204	0.95[EUR][1000 genomes]
rs73651206	1.00[EUR][1000 genomes]
rs73651227	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73651228	1.00[EUR][1000 genomes]
rs73651229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73651232	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73651246	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73651248	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7854217	1.00[EUR][1000 genomes]
rs7854349	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7861929	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7874126	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs999326	1.00[EUR][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96216200-96220600	Weak transcription	Gastric	stomach
2	chr9:96216200-96228800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr9:96216400-96220600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:96216400-96220600	Weak transcription	Esophagus	oesophagus
5	chr9:96216400-96221000	Weak transcription	Aorta	Aorta
6	chr9:96216400-96230600	Weak transcription	Fetal Muscle Trunk	muscle
7	chr9:96216600-96223400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr9:96216600-96224000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr9:96216600-96231200	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr9:96216600-96232800	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr9:96216800-96220600	Weak transcription	HUES6 Cell Line	embryonic stem cell
12	chr9:96216800-96220600	Weak transcription	Placenta	Placenta
13	chr9:96216800-96220600	Weak transcription	Ovary	ovary
14	chr9:96216800-96220600	Weak transcription	Right Ventricle	heart
15	chr9:96216800-96220800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
16	chr9:96216800-96222200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
17	chr9:96216800-96222400	Enhancers	HepG2	liver
18	chr9:96216800-96225000	Enhancers	Primary neutrophils fromperipheralblood	blood
19	chr9:96216800-96230600	Weak transcription	Fetal Stomach	stomach
20	chr9:96216800-96231400	Enhancers	Primary T cells from cord blood	blood
21	chr9:96217000-96220600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr9:96217000-96220600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
23	chr9:96217000-96220600	Weak transcription	Fetal Kidney	kidney
24	chr9:96217000-96220600	Weak transcription	Fetal Muscle Leg	muscle
25	chr9:96217000-96221000	Weak transcription	Brain Anterior Caudate	brain
26	chr9:96217000-96221200	Weak transcription	Brain Substantia Nigra	brain
27	chr9:96217000-96222200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
28	chr9:96217000-96226200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr9:96217200-96220600	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr9:96217200-96221200	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr9:96217200-96221400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr9:96217200-96239800	Weak transcription	Fetal Brain Female	brain
33	chr9:96217400-96220600	Weak transcription	Right Atrium	heart
34	chr9:96217400-96220800	Weak transcription	Fetal Lung	lung
35	chr9:96217400-96221400	Weak transcription	HSMMtube	muscle
36	chr9:96217400-96222800	Weak transcription	Thymus	Thymus
37	chr9:96217400-96223200	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr9:96217400-96228200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr9:96217400-96230800	Weak transcription	HSMM	muscle
40	chr9:96217600-96220600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr9:96217600-96221200	Weak transcription	Brain Angular Gyrus	brain
42	chr9:96217600-96221400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr9:96217600-96221600	Weak transcription	Brain Cingulate Gyrus	brain
44	chr9:96217600-96223000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr9:96217600-96226000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
46	chr9:96217800-96221000	Weak transcription	HUES64 Cell Line	embryonic stem cell
47	chr9:96217800-96229000	Weak transcription	Brain Germinal Matrix	brain
48	chr9:96218000-96221800	Weak transcription	Primary B cells from cord blood	blood
49	chr9:96218000-96222000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
50	chr9:96218000-96222400	Enhancers	Primary T helper naive cells fromperipheralblood	blood

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