Variant report

Variant	rs4469524
Chromosome Location	chr9:96132400-96132401
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96131323..96133255-chr9:96141524..96143959,2	MCF-7	breast:
2	chr9:95895210..95897945-chr9:96130128..96133625,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000131669	Chromatin interaction

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10512224	0.82[EUR][1000 genomes]
rs10512226	0.86[EUR][1000 genomes]
rs10739946	0.82[EUR][1000 genomes]
rs12553275	0.86[EUR][1000 genomes]
rs1331588	0.86[EUR][1000 genomes]
rs16909211	0.82[EUR][1000 genomes]
rs1889338	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1931369	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1931372	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2151714	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2184256	0.97[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs2494781	0.82[EUR][1000 genomes]
rs2494782	0.84[EUR][1000 genomes]
rs28403269	0.86[EUR][1000 genomes]
rs28421070	0.91[AMR][1000 genomes]
rs2991376	0.91[AMR][1000 genomes]
rs2995993	0.91[AMR][1000 genomes]
rs2995999	0.91[AMR][1000 genomes]
rs4548243	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4573340	0.86[EUR][1000 genomes]
rs4743916	0.95[EUR][1000 genomes]
rs4743917	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4743920	0.95[EUR][1000 genomes]
rs4744229	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55702483	0.86[EUR][1000 genomes]
rs55812345	0.82[EUR][1000 genomes]
rs56375911	0.86[EUR][1000 genomes]
rs58790127	0.86[EUR][1000 genomes]
rs60212988	0.86[EUR][1000 genomes]
rs6479479	0.95[EUR][1000 genomes]
rs6479480	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7020195	0.86[EUR][1000 genomes]
rs73651204	0.82[EUR][1000 genomes]
rs73651206	0.86[EUR][1000 genomes]
rs73651227	0.86[EUR][1000 genomes]
rs73651228	0.86[EUR][1000 genomes]
rs73651229	0.86[EUR][1000 genomes]
rs73651232	0.86[EUR][1000 genomes]
rs7854217	0.86[EUR][1000 genomes]
rs7854349	0.86[EUR][1000 genomes]
rs7861929	0.82[EUR][1000 genomes]
rs7874126	0.82[EUR][1000 genomes]
rs999326	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96132400-96132600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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