Variant report

Variant	rs4743917
Chromosome Location	chr9:96123653-96123654
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1889338	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs1931369	0.83[EUR][1000 genomes]
rs1931372	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs2151714	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2184256	0.85[AFR][1000 genomes]
rs28421070	0.85[AMR][1000 genomes]
rs2991376	0.85[AMR][1000 genomes]
rs2995993	0.85[AMR][1000 genomes]
rs2995999	0.85[AMR][1000 genomes]
rs4469524	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4548243	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs4743916	0.87[EUR][1000 genomes]
rs4743920	0.87[EUR][1000 genomes]
rs4744229	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6479479	0.87[EUR][1000 genomes]
rs6479480	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv2761278	chr9:96115678-96126104	ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96109200-96127800	Weak transcription	Right Atrium	heart
2	chr9:96120200-96125600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:96121000-96125000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr9:96121200-96126200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
5	chr9:96121400-96124800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
6	chr9:96122400-96125000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:96122600-96123800	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr9:96122800-96123800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:96123200-96124000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr9:96123600-96125000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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