Variant report

Variant	rs1931372
Chromosome Location	chr9:96119033-96119034
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:63)

rs_ID	r²[population]
rs10512226	0.81[EUR][1000 genomes]
rs10739946	0.86[EUR][1000 genomes]
rs10761208	0.89[ASW][hapmap];0.96[YRI][hapmap]
rs1111776	0.89[ASW][hapmap];0.91[YRI][hapmap]
rs12553275	0.81[EUR][1000 genomes]
rs12684392	0.89[ASW][hapmap];0.96[YRI][hapmap]
rs1331588	0.83[TSI][hapmap];0.81[EUR][1000 genomes]
rs1889338	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1891970	0.96[YRI][hapmap]
rs1931369	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2151714	1.00[CEU][hapmap];0.96[YRI][hapmap];0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2169756	0.91[YRI][hapmap]
rs2184256	0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2494781	0.86[EUR][1000 genomes]
rs2494782	0.80[EUR][1000 genomes]
rs28403269	0.81[EUR][1000 genomes]
rs28421070	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2991376	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[AMR][1000 genomes]
rs2991383	0.81[EUR][1000 genomes]
rs2995993	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2995994	0.83[AFR][1000 genomes]
rs2995999	1.00[CEU][hapmap];0.96[YRI][hapmap];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3001449	0.83[AMR][1000 genomes]
rs3001453	1.00[CEU][hapmap];0.83[GIH][hapmap];1.00[TSI][hapmap];0.81[EUR][1000 genomes]
rs4469524	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4548243	1.00[CEU][hapmap];0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4573340	0.81[EUR][1000 genomes]
rs4743913	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs4743914	0.96[YRI][hapmap]
rs4743916	1.00[EUR][1000 genomes]
rs4743917	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4743920	1.00[EUR][1000 genomes]
rs4744214	0.96[YRI][hapmap]
rs4744229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55702483	0.81[EUR][1000 genomes]
rs56375911	0.81[EUR][1000 genomes]
rs57631285	0.81[EUR][1000 genomes]
rs58790127	0.81[EUR][1000 genomes]
rs60212988	0.81[EUR][1000 genomes]
rs6479473	0.96[YRI][hapmap]
rs6479479	1.00[EUR][1000 genomes]
rs6479480	0.87[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7020195	1.00[CEU][hapmap];0.81[EUR][1000 genomes]
rs7025514	0.87[YRI][hapmap]
rs7025611	1.00[CEU][hapmap];0.96[YRI][hapmap]
rs7027660	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs7031917	0.89[YRI][hapmap]
rs7038564	1.00[TSI][hapmap]
rs7042492	0.96[YRI][hapmap]
rs73651206	0.81[EUR][1000 genomes]
rs73651227	0.81[EUR][1000 genomes]
rs73651228	0.81[EUR][1000 genomes]
rs73651229	0.81[EUR][1000 genomes]
rs73651232	0.81[EUR][1000 genomes]
rs73651246	0.81[EUR][1000 genomes]
rs73651248	0.81[EUR][1000 genomes]
rs7853075	0.87[YRI][hapmap]
rs7854217	0.81[EUR][1000 genomes]
rs7854349	0.81[EUR][1000 genomes]
rs7866298	0.96[YRI][hapmap]
rs7867386	0.80[YRI][hapmap]
rs7872608	0.96[YRI][hapmap]
rs999326	1.00[CEU][hapmap];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv1798245	chr9:96098930-96120432	Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2761278	chr9:96115678-96126104	ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96109200-96127800	Weak transcription	Right Atrium	heart
2	chr9:96111200-96122400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr9:96116000-96120200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
4	chr9:96116200-96119800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr9:96117000-96120400	Genic enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr9:96117200-96120000	Genic enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr9:96117200-96120600	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr9:96117800-96119600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr9:96118000-96121000	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr9:96118200-96119200	Strong transcription	H9 Cell Line	embryonic stem cell
11	chr9:96118200-96119200	Strong transcription	HUES48 Cell Line	embryonic stem cell
12	chr9:96118800-96119600	Strong transcription	ES-I3 Cell Line	embryonic stem cell
13	chr9:96118800-96120000	Strong transcription	H1 Cell Line	embryonic stem cell
14	chr9:96119000-96120200	Strong transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links