Variant report

Variant	rs73651246
Chromosome Location	chr9:96287924-96287925
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr9:96287734-96288091	K562	blood:	n/a	chr9:96287903-96287911 chr9:96287906-96287913 chr9:96287855-96287869 chr9:96287901-96287913
2	MAZ	chr9:96287793-96288004	K562	blood:	n/a	chr9:96287903-96287912
3	CTCF	chr9:96287889-96288025	K562	blood:	n/a	n/a
4	MAFF	chr9:96287720-96288084	K562	blood:	n/a	n/a
5	CTCF	chr9:96287923-96288036	K562	blood:	n/a	n/a
6	MAX	chr9:96287820-96288078	H1-hESC	embryonic stem cell:	n/a	chr9:96287903-96287912
7	MXI1	chr9:96287855-96287934	K562	blood:	n/a	n/a
8	MAFK	chr9:96287727-96288111	K562	blood:	n/a	chr9:96287901-96287910
9	BACH1	chr9:96287828-96287962	K562	blood:	n/a	n/a
10	POLR2A	chr9:96287834-96288049	K562	blood:	n/a	n/a
11	HDAC2	chr9:96287855-96288062	K562	blood:	n/a	n/a
12	TAL1	chr9:96287831-96288004	K562	blood:	n/a	n/a
13	MYC	chr9:96287810-96288032	K562	blood:	n/a	chr9:96287903-96287912
14	MAX	chr9:96287690-96288168	K562	blood:	n/a	chr9:96287903-96287912
15	BHLHE40	chr9:96287778-96288122	K562	blood:	n/a	n/a
16	RCOR1	chr9:96287782-96288104	K562	blood:	n/a	n/a
17	MYC	chr9:96287706-96288135	K562	blood:	n/a	chr9:96287903-96287912
18	TBP	chr9:96287920-96288087	K562	blood:	n/a	n/a
19	MAX	chr9:96287800-96288008	K562	blood:	n/a	chr9:96287903-96287912
20	MAX	chr9:96287805-96288075	K562	blood:	n/a	chr9:96287903-96287912
21	TBL1XR1	chr9:96287800-96287935	K562	blood:	n/a	n/a
22	CTCF	chr9:96287840-96287990	HCPEpiC	choroid plexus:	n/a	n/a
23	MYC	chr9:96287737-96288038	K562	blood:	n/a	chr9:96287903-96287912
24	CEBPB	chr9:96287813-96288013	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr9:96211644..96215224-chr9:96285600..96289647,5	MCF-7	breast:
2	chr9:96212405..96217053-chr9:96287727..96291116,5	MCF-7	breast:
3	chr9:96268450..96271013-chr9:96286354..96288528,2	K562	blood:
4	chr9:96287109..96291346-chr9:96292892..96295512,4	MCF-7	breast:
5	chr9:96220139..96221974-chr9:96287391..96289442,3	MCF-7	breast:
6	chr9:96287503..96289688-chr9:96299052..96301851,2	K562	blood:
7	chr9:96286264..96288852-chr9:96329560..96332298,3	MCF-7	breast:

Variant related genes	Relation type
FAM120A	TF binding region
ENSG00000048828	Chromatin interaction
ENSG00000188938	Chromatin interaction

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10046907	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10124517	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10512224	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10512226	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12552189	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12553275	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1331588	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16909211	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1931372	0.81[EUR][1000 genomes]
rs28403269	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3897285	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4573340	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4743916	0.81[EUR][1000 genomes]
rs4743920	0.81[EUR][1000 genomes]
rs4744229	0.81[EUR][1000 genomes]
rs55649770	0.81[EUR][1000 genomes]
rs55702483	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55812345	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56375911	0.87[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57303681	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57631285	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58790127	0.90[EUR][1000 genomes]
rs60212988	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60253984	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60610533	0.89[ASN][1000 genomes]
rs60650773	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61340241	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6479479	0.81[EUR][1000 genomes]
rs7020195	0.90[EUR][1000 genomes]
rs7038564	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73651204	0.86[EUR][1000 genomes]
rs73651206	0.90[EUR][1000 genomes]
rs73651227	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73651228	0.90[EUR][1000 genomes]
rs73651229	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73651232	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73651248	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7854217	0.90[EUR][1000 genomes]
rs7854349	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7861929	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7874126	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs999326	0.90[EUR][1000 genomes]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96243000-96288000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr9:96260800-96290800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:96262200-96289000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr9:96263200-96290200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr9:96263400-96289000	Weak transcription	Fetal Kidney	kidney
6	chr9:96264200-96288400	Weak transcription	HSMMtube	muscle
7	chr9:96270800-96291600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr9:96274000-96291000	Weak transcription	Small Intestine	intestine
9	chr9:96275800-96299600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
10	chr9:96276000-96295600	Weak transcription	Stomach Mucosa	stomach
11	chr9:96276000-96300000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr9:96276200-96290200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr9:96276200-96291400	Weak transcription	Brain Germinal Matrix	brain
14	chr9:96278400-96310800	Strong transcription	Rectal Mucosa Donor 31	rectum
15	chr9:96278400-96327000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr9:96278400-96327200	Strong transcription	Primary monocytes fromperipheralblood	blood
17	chr9:96278400-96328200	Strong transcription	Monocytes-CD14+_RO01746	blood
18	chr9:96278600-96311200	Strong transcription	Rectal Mucosa Donor 29	rectum
19	chr9:96278800-96298600	Strong transcription	Placenta	Placenta
20	chr9:96279000-96297400	Strong transcription	HepG2	liver
21	chr9:96279000-96298600	Strong transcription	GM12878-XiMat	blood
22	chr9:96279000-96310400	Strong transcription	Primary B cells from peripheral blood	blood
23	chr9:96279000-96327400	Strong transcription	Primary T helper cells fromperipheralblood	blood
24	chr9:96280000-96288200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr9:96281400-96295600	Weak transcription	Psoas Muscle	Psoas
26	chr9:96282200-96323400	Strong transcription	Primary B cells from cord blood	blood
27	chr9:96283000-96297200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr9:96283200-96288200	Weak transcription	NHLF	lung
29	chr9:96283200-96289400	Weak transcription	H1 Cell Line	embryonic stem cell
30	chr9:96283200-96291200	Weak transcription	Fetal Brain Female	brain
31	chr9:96283600-96297400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr9:96284200-96290600	Enhancers	Fetal Heart	heart
33	chr9:96284400-96297800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr9:96284600-96327200	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr9:96284600-96328200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr9:96284800-96292000	Strong transcription	Fetal Intestine Small	intestine
37	chr9:96284800-96297400	Strong transcription	Fetal Stomach	stomach
38	chr9:96284800-96309800	Strong transcription	Duodenum Mucosa	Duodenum
39	chr9:96284800-96327200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr9:96285000-96288600	Genic enhancers	Skeletal Muscle Female	skeletal muscle
41	chr9:96285000-96289200	Strong transcription	Hela-S3	cervix
42	chr9:96285000-96292000	Strong transcription	Fetal Muscle Leg	muscle
43	chr9:96285000-96292200	Strong transcription	Primary T cells from cord blood	blood
44	chr9:96285000-96292200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr9:96285000-96292200	Strong transcription	Fetal Muscle Trunk	muscle
46	chr9:96285000-96293200	Strong transcription	Cortex derived primary cultured neurospheres	brain
47	chr9:96285000-96297200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
48	chr9:96285000-96297600	Strong transcription	HUES6 Cell Line	embryonic stem cell
49	chr9:96285000-96297800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
50	chr9:96285000-96298800	Strong transcription	A549	lung

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