Variant report

Variant	rs10512224
Chromosome Location	chr9:96229440-96229441
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96228099..96230540-chr9:96327402..96330040,2	K562	blood:
2	chr9:96224548..96228951-chr9:96229326..96235685,10	K562	blood:
3	chr9:96229227..96230937-chr9:96231650..96233389,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000263875	Chromatin interaction

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10046907	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs10122014	0.82[JPT][hapmap]
rs10124517	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10512226	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12552189	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12553275	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1317260	0.82[JPT][hapmap]
rs1331588	1.00[CEU][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16909211	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1889338	0.82[EUR][1000 genomes]
rs1931369	0.82[EUR][1000 genomes]
rs2151714	0.82[EUR][1000 genomes]
rs2250236	0.82[JPT][hapmap]
rs2254715	0.82[JPT][hapmap]
rs28403269	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2994366	1.00[JPT][hapmap]
rs2994368	0.82[JPT][hapmap]
rs3897285	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4146138	0.82[JPT][hapmap]
rs4469524	0.82[EUR][1000 genomes]
rs4548243	0.82[EUR][1000 genomes]
rs4573340	0.95[EUR][1000 genomes]
rs55649770	0.86[EUR][1000 genomes]
rs55702483	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55812345	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56375911	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57303681	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57631285	0.86[EUR][1000 genomes]
rs58790127	0.95[EUR][1000 genomes]
rs60212988	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60253984	0.86[EUR][1000 genomes]
rs60650773	0.86[EUR][1000 genomes]
rs61340241	0.86[EUR][1000 genomes]
rs6479480	0.82[EUR][1000 genomes]
rs7020195	1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs7025805	0.82[YRI][hapmap]
rs7038564	1.00[CEU][hapmap];1.00[JPT][hapmap]
rs7044283	0.82[CHB][hapmap]
rs73651204	0.91[EUR][1000 genomes]
rs73651206	0.95[EUR][1000 genomes]
rs73651227	0.95[EUR][1000 genomes]
rs73651228	0.95[EUR][1000 genomes]
rs73651229	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73651232	0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73651246	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs73651248	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7854217	0.95[EUR][1000 genomes]
rs7854349	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7857165	0.82[JPT][hapmap]
rs7861929	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7874126	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9299409	0.82[JPT][hapmap]
rs999326	0.95[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96216400-96230600	Weak transcription	Fetal Muscle Trunk	muscle
2	chr9:96216600-96231200	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr9:96216600-96232800	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr9:96216800-96230600	Weak transcription	Fetal Stomach	stomach
5	chr9:96216800-96231400	Enhancers	Primary T cells from cord blood	blood
6	chr9:96217200-96239800	Weak transcription	Fetal Brain Female	brain
7	chr9:96217400-96230800	Weak transcription	HSMM	muscle
8	chr9:96219200-96233400	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr9:96220800-96233200	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr9:96221600-96230600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
11	chr9:96222200-96230600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr9:96222600-96232200	Enhancers	Primary T killer memory cells from peripheral blood	blood
13	chr9:96222800-96230000	Enhancers	Primary hematopoietic stem cells	blood
14	chr9:96222800-96231600	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr9:96224400-96232600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr9:96224400-96233600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
17	chr9:96224800-96232000	Enhancers	Primary T helper naive cells from peripheral blood	blood
18	chr9:96224800-96232000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
19	chr9:96225000-96233600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
20	chr9:96225400-96230200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr9:96225600-96230000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr9:96225600-96230400	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr9:96225600-96231200	Enhancers	Stomach Mucosa	stomach
24	chr9:96225800-96230000	Enhancers	Primary B cells from cord blood	blood
25	chr9:96225800-96230400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr9:96225800-96231200	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr9:96225800-96231600	Enhancers	HUES64 Cell Line	embryonic stem cell
28	chr9:96225800-96231600	Enhancers	Brain Substantia Nigra	brain
29	chr9:96225800-96231800	Enhancers	Primary B cells from peripheral blood	blood
30	chr9:96226000-96230000	Enhancers	iPS-18 Cell Line	embryonic stem cell
31	chr9:96226000-96231800	Enhancers	iPS-15b Cell Line	embryonic stem cell
32	chr9:96226000-96233800	Enhancers	Cortex derived primary cultured neurospheres	brain
33	chr9:96226000-96233800	Enhancers	Small Intestine	intestine
34	chr9:96226200-96231200	Enhancers	Duodenum Smooth Muscle	Duodenum
35	chr9:96226400-96231600	Enhancers	Primary T cells fromperipheralblood	blood
36	chr9:96226400-96233400	Enhancers	Colon Smooth Muscle	Colon
37	chr9:96226600-96230000	Enhancers	HUES48 Cell Line	embryonic stem cell
38	chr9:96226600-96230000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
39	chr9:96226600-96230000	Enhancers	Fetal Heart	heart
40	chr9:96226600-96230600	Enhancers	Fetal Thymus	thymus
41	chr9:96226600-96231200	Enhancers	Fetal Intestine Large	intestine
42	chr9:96226600-96231600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
43	chr9:96226600-96231600	Enhancers	Brain Hippocampus Middle	brain
44	chr9:96226600-96231600	Enhancers	Psoas Muscle	Psoas
45	chr9:96226600-96231600	Enhancers	Sigmoid Colon	Sigmoid Colon
46	chr9:96227000-96232000	Enhancers	Brain Anterior Caudate	brain
47	chr9:96227200-96231200	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr9:96227200-96231200	Enhancers	Adipose Nuclei	Adipose
49	chr9:96227400-96230800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
50	chr9:96227400-96231000	Enhancers	Stomach Smooth Muscle	stomach

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