Variant report

Variant	rs16909211
Chromosome Location	chr9:96266147-96266148
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96264790..96266601-chr9:96268569..96271456,2	K562	blood:
2	chr9:96265636..96267841-chr9:96337303..96340104,2	MCF-7	breast:
3	chr9:96261936..96263563-chr9:96264731..96266679,2	MCF-7	breast:
4	chr9:96257221..96259479-chr9:96265119..96266696,2	K562	blood:
5	chr9:96252755..96257145-chr9:96262506..96266410,6	MCF-7	breast:
6	chr9:96211724..96215064-chr9:96263313..96268158,4	MCF-7	breast:
7	chr9:96255210..96257203-chr9:96265024..96267794,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000048828	Chromatin interaction
ENSG00000188938	Chromatin interaction
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10046907	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10122014	1.00[CHB][hapmap]
rs10124517	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10512224	1.00[CEU][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10512226	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12552189	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12553275	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12554020	0.80[YRI][hapmap]
rs1317260	1.00[CHB][hapmap]
rs13286188	0.86[CHB][hapmap]
rs1331588	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1889338	0.82[EUR][1000 genomes]
rs1931369	0.82[EUR][1000 genomes]
rs2151714	0.82[EUR][1000 genomes]
rs2250236	1.00[CHB][hapmap]
rs2254715	1.00[CHB][hapmap]
rs28403269	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2994366	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2994368	1.00[CHB][hapmap]
rs3897285	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4146138	1.00[CHB][hapmap]
rs4469524	0.82[EUR][1000 genomes]
rs4548243	0.82[EUR][1000 genomes]
rs4552973	0.83[YRI][hapmap]
rs4573340	0.95[EUR][1000 genomes]
rs55649770	0.86[EUR][1000 genomes]
rs55702483	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55812345	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56375911	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57303681	0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57631285	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58790127	0.95[EUR][1000 genomes]
rs59483310	0.96[AFR][1000 genomes]
rs60212988	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60253984	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60610533	0.89[ASN][1000 genomes]
rs60650773	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61340241	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6479480	0.82[EUR][1000 genomes]
rs7020195	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs7033849	1.00[CHB][hapmap]
rs7038564	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7044283	1.00[CHB][hapmap]
rs73651204	0.91[EUR][1000 genomes]
rs73651206	0.95[EUR][1000 genomes]
rs73651227	0.95[EUR][1000 genomes]
rs73651228	0.95[EUR][1000 genomes]
rs73651229	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73651232	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73651246	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73651248	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7854217	0.95[EUR][1000 genomes]
rs7854349	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7857165	1.00[CHB][hapmap]
rs7861929	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7874126	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs914417	1.00[CHB][hapmap]
rs9299409	1.00[CHB][hapmap]
rs999326	0.95[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
2	chr9:96243000-96288000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:96243400-96271200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr9:96254800-96266600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr9:96255200-96266800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr9:96255200-96267200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:96255400-96268400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr9:96255800-96266200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:96255800-96266800	Strong transcription	HepG2	liver
10	chr9:96256400-96267200	Strong transcription	HUES64 Cell Line	embryonic stem cell
11	chr9:96256800-96269800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:96257200-96267200	Strong transcription	Fetal Intestine Large	intestine
13	chr9:96258800-96267200	Strong transcription	Fetal Lung	lung
14	chr9:96260400-96275600	Weak transcription	Esophagus	oesophagus
15	chr9:96260800-96290800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr9:96262200-96289000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr9:96263000-96268000	Weak transcription	Gastric	stomach
18	chr9:96263200-96267800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr9:96263200-96270600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr9:96263200-96285800	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr9:96263200-96287600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr9:96263200-96290200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
23	chr9:96263400-96268400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr9:96263400-96269800	Weak transcription	Spleen	Spleen
25	chr9:96263400-96289000	Weak transcription	Fetal Kidney	kidney
26	chr9:96263600-96275400	Weak transcription	Brain Germinal Matrix	brain
27	chr9:96263600-96280200	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr9:96264000-96266400	Weak transcription	Lung	lung
29	chr9:96264000-96266400	Weak transcription	Right Atrium	heart
30	chr9:96264000-96266400	Strong transcription	Dnd41	blood
31	chr9:96264000-96266600	Enhancers	Primary monocytes fromperipheralblood	blood
32	chr9:96264000-96266600	Strong transcription	K562	blood
33	chr9:96264000-96267000	Weak transcription	Stomach Mucosa	stomach
34	chr9:96264000-96267800	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr9:96264000-96267800	Weak transcription	Small Intestine	intestine
36	chr9:96264000-96268000	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr9:96264000-96268000	Weak transcription	Brain Substantia Nigra	brain
38	chr9:96264000-96268400	Strong transcription	Fetal Thymus	thymus
39	chr9:96264000-96269000	Weak transcription	Fetal Intestine Small	intestine
40	chr9:96264000-96269600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
41	chr9:96264000-96270400	Weak transcription	Pancreas	Pancrea
42	chr9:96264000-96270400	Weak transcription	Thymus	Thymus
43	chr9:96264000-96273000	Weak transcription	Ovary	ovary
44	chr9:96264000-96273200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
45	chr9:96264000-96273400	Weak transcription	Brain Cingulate Gyrus	brain
46	chr9:96264000-96273400	Weak transcription	Fetal Heart	heart
47	chr9:96264000-96273600	Weak transcription	Brain Angular Gyrus	brain
48	chr9:96264000-96275600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
49	chr9:96264000-96280400	Weak transcription	Colonic Mucosa	Colon
50	chr9:96264000-96281600	Weak transcription	Aorta	Aorta

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