Variant report

Variant	rs1931369
Chromosome Location	chr9:96149760-96149761
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10512224	0.82[EUR][1000 genomes]
rs10512226	0.85[TSI][hapmap];0.86[EUR][1000 genomes]
rs10739946	0.82[EUR][1000 genomes]
rs10761208	1.00[ASW][hapmap];0.85[TSI][hapmap];0.83[YRI][hapmap]
rs1111776	1.00[ASW][hapmap];0.85[TSI][hapmap]
rs12341311	0.89[ASW][hapmap]
rs12553275	0.86[EUR][1000 genomes]
rs12684392	1.00[ASW][hapmap];0.85[TSI][hapmap];0.83[YRI][hapmap]
rs1331588	1.00[TSI][hapmap];0.86[EUR][1000 genomes]
rs16909013	0.89[ASW][hapmap]
rs16909211	0.82[EUR][1000 genomes]
rs1889338	1.00[CEU][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1891970	0.83[YRI][hapmap]
rs1931372	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2151714	1.00[CEU][hapmap];0.83[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2184256	0.84[AMR][1000 genomes]
rs2494781	0.82[EUR][1000 genomes]
rs2494782	0.84[EUR][1000 genomes]
rs28403269	0.86[EUR][1000 genomes]
rs28421070	0.91[AMR][1000 genomes]
rs2991376	1.00[CEU][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes]
rs2995993	0.91[AMR][1000 genomes]
rs2995999	1.00[CEU][hapmap];0.83[YRI][hapmap];0.91[AMR][1000 genomes]
rs3001453	1.00[CEU][hapmap];0.83[GIH][hapmap];0.83[TSI][hapmap]
rs4469524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4548243	1.00[CEU][hapmap];0.83[YRI][hapmap];0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4573340	0.86[EUR][1000 genomes]
rs4743913	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs4743914	0.83[YRI][hapmap]
rs4743916	0.95[EUR][1000 genomes]
rs4743917	0.83[EUR][1000 genomes]
rs4743920	0.95[EUR][1000 genomes]
rs4744214	0.83[YRI][hapmap]
rs4744229	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55702483	0.86[EUR][1000 genomes]
rs55812345	0.82[EUR][1000 genomes]
rs56375911	0.86[EUR][1000 genomes]
rs58790127	0.86[EUR][1000 genomes]
rs60212988	0.86[EUR][1000 genomes]
rs6479473	0.83[YRI][hapmap]
rs6479479	0.95[EUR][1000 genomes]
rs6479480	0.80[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7020195	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs7025611	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs7038564	0.83[TSI][hapmap]
rs7042492	0.83[YRI][hapmap]
rs73651204	0.82[EUR][1000 genomes]
rs73651206	0.86[EUR][1000 genomes]
rs73651227	0.86[EUR][1000 genomes]
rs73651228	0.86[EUR][1000 genomes]
rs73651229	0.86[EUR][1000 genomes]
rs73651232	0.86[EUR][1000 genomes]
rs7854217	0.86[EUR][1000 genomes]
rs7854349	0.86[EUR][1000 genomes]
rs7861929	0.82[EUR][1000 genomes]
rs7866298	0.83[YRI][hapmap]
rs7872608	0.83[YRI][hapmap]
rs7874126	0.82[EUR][1000 genomes]
rs999326	1.00[CEU][hapmap];0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96148600-96153200	Weak transcription	Placenta	Placenta
2	chr9:96149400-96150000	Enhancers	Rectal Mucosa Donor 29	rectum
3	chr9:96149600-96150000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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