Variant report

Variant	rs28403269
Chromosome Location	chr9:96234428-96234429
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr9:96091181..96094144-chr9:96233405..96236140,2	MCF-7	breast:
2	chr9:96233392..96236204-chr9:96237151..96240894,5	MCF-7	breast:
3	chr9:96213859..96215584-chr9:96233474..96236266,2	K562	blood:
4	chr9:96233835..96235400-chr9:96241392..96243582,2	K562	blood:
5	chr9:96224548..96228951-chr9:96229326..96235685,10	K562	blood:
6	chr9:96234181..96236763-chr9:96245089..96247624,3	K562	blood:
7	chr9:96224590..96228623-chr9:96232472..96235685,5	K562	blood:
8	chr9:96232297..96234859-chr9:96241804..96243993,2	MCF-7	breast:
9	chr9:96216144..96218781-chr9:96233420..96235999,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000048828	Chromatin interaction
ENSG00000188938	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10046907	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10124517	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10512224	0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10512226	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12552189	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12553275	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1331588	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16909211	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1889338	0.86[EUR][1000 genomes]
rs1931369	0.86[EUR][1000 genomes]
rs1931372	0.81[EUR][1000 genomes]
rs2151714	0.86[EUR][1000 genomes]
rs3897285	0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4469524	0.86[EUR][1000 genomes]
rs4548243	0.86[EUR][1000 genomes]
rs4573340	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4743916	0.81[EUR][1000 genomes]
rs4743920	0.81[EUR][1000 genomes]
rs4744229	0.81[EUR][1000 genomes]
rs55649770	0.90[EUR][1000 genomes]
rs55702483	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55812345	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56375911	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57303681	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57631285	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58790127	1.00[EUR][1000 genomes]
rs60212988	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60253984	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60650773	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61340241	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6479479	0.81[EUR][1000 genomes]
rs6479480	0.86[EUR][1000 genomes]
rs7020195	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7038564	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73651204	0.95[EUR][1000 genomes]
rs73651206	1.00[EUR][1000 genomes]
rs73651227	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73651228	1.00[EUR][1000 genomes]
rs73651229	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73651232	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73651246	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73651248	0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7854217	1.00[EUR][1000 genomes]
rs7854349	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7861929	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7874126	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs999326	1.00[EUR][1000 genomes]

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96217200-96239800	Weak transcription	Fetal Brain Female	brain
2	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
3	chr9:96230000-96235800	Weak transcription	Primary hematopoietic stem cells	blood
4	chr9:96230000-96242200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr9:96230000-96244800	Weak transcription	Thymus	Thymus
6	chr9:96231600-96234600	Weak transcription	Fetal Heart	heart
7	chr9:96231600-96235200	Weak transcription	Placenta	Placenta
8	chr9:96231600-96235400	Weak transcription	Fetal Stomach	stomach
9	chr9:96231600-96235600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr9:96231600-96235600	Weak transcription	Esophagus	oesophagus
11	chr9:96231600-96235600	Weak transcription	Ovary	ovary
12	chr9:96231600-96235800	Weak transcription	NHLF	lung
13	chr9:96231600-96238000	Weak transcription	Fetal Kidney	kidney
14	chr9:96231600-96238200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr9:96231600-96238400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr9:96231600-96240600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr9:96231600-96242000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr9:96231600-96242200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr9:96231600-96242200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr9:96231600-96242400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr9:96231600-96242600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr9:96231600-96242600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr9:96231600-96242600	Weak transcription	Lung	lung
24	chr9:96231600-96242600	Weak transcription	Right Atrium	heart
25	chr9:96231600-96244800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr9:96231600-96244800	Weak transcription	Aorta	Aorta
27	chr9:96231600-96246400	Weak transcription	Brain Germinal Matrix	brain
28	chr9:96231600-96246400	Weak transcription	Spleen	Spleen
29	chr9:96231600-96251600	Weak transcription	Pancreas	Pancrea
30	chr9:96231600-96256400	Weak transcription	NH-A	brain
31	chr9:96231800-96235600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr9:96231800-96236200	Weak transcription	Osteobl	bone
33	chr9:96231800-96237000	Weak transcription	HUES6 Cell Line	embryonic stem cell
34	chr9:96231800-96238400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr9:96231800-96242000	Weak transcription	H1 Cell Line	embryonic stem cell
36	chr9:96231800-96242200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
37	chr9:96231800-96242400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr9:96231800-96245000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr9:96231800-96246400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:96231800-96246600	Weak transcription	Placenta Amnion	Placenta Amnion
41	chr9:96232000-96246400	Weak transcription	Stomach Smooth Muscle	stomach
42	chr9:96232200-96234600	Weak transcription	Fetal Lung	lung
43	chr9:96232200-96238000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr9:96232400-96237800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr9:96232400-96237800	Weak transcription	Skeletal Muscle Male	skeletal muscle
46	chr9:96232400-96242200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
47	chr9:96232600-96237400	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr9:96232600-96238400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
49	chr9:96232600-96240000	Strong transcription	Dnd41	blood
50	chr9:96232600-96241800	Weak transcription	Adipose Nuclei	Adipose

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