Variant report

Variant	rs6479479
Chromosome Location	chr9:96128761-96128762
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs10512226	0.81[EUR][1000 genomes]
rs10739946	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12553275	0.81[EUR][1000 genomes]
rs1331588	0.81[EUR][1000 genomes]
rs1889338	0.95[EUR][1000 genomes]
rs1931369	0.95[EUR][1000 genomes]
rs1931372	1.00[EUR][1000 genomes]
rs2151714	0.95[EUR][1000 genomes]
rs2184256	0.84[EUR][1000 genomes]
rs2266011	0.85[AMR][1000 genomes]
rs2494781	0.86[EUR][1000 genomes]
rs2494782	0.80[EUR][1000 genomes]
rs28403269	0.81[EUR][1000 genomes]
rs28421070	0.81[EUR][1000 genomes]
rs2991383	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2995993	0.81[EUR][1000 genomes]
rs2995999	0.81[EUR][1000 genomes]
rs3001453	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4469524	0.95[EUR][1000 genomes]
rs4548243	0.95[EUR][1000 genomes]
rs4573340	0.81[EUR][1000 genomes]
rs4743916	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4743917	0.87[EUR][1000 genomes]
rs4743920	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4744229	1.00[EUR][1000 genomes]
rs55702483	0.81[EUR][1000 genomes]
rs56375911	0.81[EUR][1000 genomes]
rs57631285	0.81[EUR][1000 genomes]
rs58790127	0.81[EUR][1000 genomes]
rs60212988	0.81[EUR][1000 genomes]
rs60253984	0.81[EUR][1000 genomes]
rs60650773	0.81[EUR][1000 genomes]
rs61340241	0.81[EUR][1000 genomes]
rs6479472	0.81[AFR][1000 genomes]
rs6479480	0.95[EUR][1000 genomes]
rs7020195	0.81[EUR][1000 genomes]
rs7027660	0.81[EUR][1000 genomes]
rs73651206	0.81[EUR][1000 genomes]
rs73651227	0.81[EUR][1000 genomes]
rs73651228	0.81[EUR][1000 genomes]
rs73651229	0.81[EUR][1000 genomes]
rs73651232	0.81[EUR][1000 genomes]
rs73651246	0.81[EUR][1000 genomes]
rs73651248	0.81[EUR][1000 genomes]
rs7854217	0.81[EUR][1000 genomes]
rs7854349	0.81[EUR][1000 genomes]
rs999326	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96125000-96129200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
2	chr9:96126800-96128800	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr9:96126800-96129200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr9:96126800-96130400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr9:96127800-96128800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr9:96127800-96129400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr9:96127800-96129400	Strong transcription	Right Atrium	heart
8	chr9:96128200-96128800	Bivalent/Poised TSS	HepG2	liver
9	chr9:96128400-96129000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr9:96128600-96129000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell

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