Variant report

Variant	rs2494782
Chromosome Location	chr9:96150324-96150325
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1889338	0.84[EUR][1000 genomes]
rs1931369	0.84[EUR][1000 genomes]
rs1931372	0.80[EUR][1000 genomes]
rs2086104	1.00[ASN][1000 genomes]
rs2100927	1.00[ASN][1000 genomes]
rs2151714	0.84[EUR][1000 genomes]
rs2841684	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs4469524	0.84[EUR][1000 genomes]
rs4548243	0.84[EUR][1000 genomes]
rs4743916	0.80[EUR][1000 genomes]
rs4743920	0.80[EUR][1000 genomes]
rs4744229	0.80[EUR][1000 genomes]
rs6479479	0.80[EUR][1000 genomes]
rs6479480	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96148600-96153200	Weak transcription	Placenta	Placenta
2	chr9:96149800-96154200	Enhancers	Rectal Mucosa Donor 31	rectum
3	chr9:96150000-96153600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr9:96150200-96150800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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