Variant report

Variant	rs4743920
Chromosome Location	chr9:96124621-96124622
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10512226	0.81[EUR][1000 genomes]
rs10739946	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12553275	0.81[EUR][1000 genomes]
rs1331588	0.81[EUR][1000 genomes]
rs1889338	0.95[EUR][1000 genomes]
rs1931369	0.95[EUR][1000 genomes]
rs1931372	1.00[EUR][1000 genomes]
rs2151714	0.95[EUR][1000 genomes]
rs2184256	0.84[EUR][1000 genomes]
rs2266011	0.85[AMR][1000 genomes]
rs2494781	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2494782	0.80[EUR][1000 genomes]
rs28403269	0.81[EUR][1000 genomes]
rs28421070	0.81[EUR][1000 genomes]
rs2991383	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2995993	0.81[EUR][1000 genomes]
rs2995999	0.81[EUR][1000 genomes]
rs3001453	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3847306	1.00[AFR][1000 genomes]
rs4469524	0.95[EUR][1000 genomes]
rs4548243	0.95[EUR][1000 genomes]
rs4573340	0.81[EUR][1000 genomes]
rs4743916	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4743917	0.87[EUR][1000 genomes]
rs4744229	1.00[EUR][1000 genomes]
rs55702483	0.81[EUR][1000 genomes]
rs56082314	1.00[AFR][1000 genomes]
rs56375911	0.81[EUR][1000 genomes]
rs57631285	0.81[EUR][1000 genomes]
rs58790127	0.81[EUR][1000 genomes]
rs60212988	0.81[EUR][1000 genomes]
rs60253984	0.81[EUR][1000 genomes]
rs60650773	0.81[EUR][1000 genomes]
rs61340241	0.81[EUR][1000 genomes]
rs6479479	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6479480	0.95[EUR][1000 genomes]
rs7020195	0.81[EUR][1000 genomes]
rs7027660	0.81[EUR][1000 genomes]
rs73651206	0.81[EUR][1000 genomes]
rs73651227	0.81[EUR][1000 genomes]
rs73651228	0.81[EUR][1000 genomes]
rs73651229	0.81[EUR][1000 genomes]
rs73651232	0.81[EUR][1000 genomes]
rs73651246	0.81[EUR][1000 genomes]
rs73651248	0.81[EUR][1000 genomes]
rs7854217	0.81[EUR][1000 genomes]
rs7854349	0.81[EUR][1000 genomes]
rs999326	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	esv2761278	chr9:96115678-96126104	ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Strong transcription Genic enhancers Enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96109200-96127800	Weak transcription	Right Atrium	heart
2	chr9:96120200-96125600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr9:96121000-96125000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
4	chr9:96121200-96126200	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
5	chr9:96121400-96124800	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
6	chr9:96122400-96125000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:96123600-96125000	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
8	chr9:96123800-96125000	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
9	chr9:96123800-96125000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
10	chr9:96124200-96125000	Strong transcription	H9 Cell Line	embryonic stem cell
11	chr9:96124200-96127800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr9:96124400-96125000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr9:96124400-96126800	Strong transcription	HUES6 Cell Line	embryonic stem cell
14	chr9:96124400-96128400	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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