Variant report

Variant	rs7854349
Chromosome Location	chr9:96268308-96268309
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96212662..96217709-chr9:96266725..96273295,11	MCF-7	breast:
2	chr19:36413651..36415151-chr9:96267959..96269970,2	MCF-7	breast:
3	chr9:96267811..96269599-chr9:96270496..96273259,2	MCF-7	breast:
4	chr9:96261356..96262938-chr9:96267899..96270000,2	MCF-7	breast:
5	chr9:96266575..96269260-chr9:96336761..96339390,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000048828	Chromatin interaction
ENSG00000197724	Chromatin interaction
ENSG00000188938	Chromatin interaction

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:48)

rs_ID	r²[population]
rs10046907	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10124517	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10512224	0.86[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10512226	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12552189	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12553275	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1331588	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16909211	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1889338	0.86[EUR][1000 genomes]
rs1931369	0.86[EUR][1000 genomes]
rs1931372	0.81[EUR][1000 genomes]
rs2151714	0.86[EUR][1000 genomes]
rs28403269	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3897285	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4469524	0.86[EUR][1000 genomes]
rs4548243	0.86[EUR][1000 genomes]
rs4573340	1.00[EUR][1000 genomes]
rs4743916	0.81[EUR][1000 genomes]
rs4743920	0.81[EUR][1000 genomes]
rs4744229	0.81[EUR][1000 genomes]
rs55649770	0.90[EUR][1000 genomes]
rs55702483	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55812345	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56375911	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57303681	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57631285	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58790127	1.00[EUR][1000 genomes]
rs60212988	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60253984	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60610533	0.89[ASN][1000 genomes]
rs60650773	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61340241	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6479479	0.81[EUR][1000 genomes]
rs6479480	0.86[EUR][1000 genomes]
rs7020195	1.00[EUR][1000 genomes]
rs7038564	0.81[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73651204	0.95[EUR][1000 genomes]
rs73651206	1.00[EUR][1000 genomes]
rs73651227	1.00[EUR][1000 genomes]
rs73651228	1.00[EUR][1000 genomes]
rs73651229	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73651232	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73651246	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73651248	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7854217	1.00[EUR][1000 genomes]
rs7861929	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7874126	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs999326	1.00[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
2	chr9:96243000-96288000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:96243400-96271200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr9:96255400-96268400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr9:96256800-96269800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr9:96260400-96275600	Weak transcription	Esophagus	oesophagus
7	chr9:96260800-96290800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr9:96262200-96289000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr9:96263200-96270600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr9:96263200-96285800	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr9:96263200-96287600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:96263200-96290200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr9:96263400-96268400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
14	chr9:96263400-96269800	Weak transcription	Spleen	Spleen
15	chr9:96263400-96289000	Weak transcription	Fetal Kidney	kidney
16	chr9:96263600-96275400	Weak transcription	Brain Germinal Matrix	brain
17	chr9:96263600-96280200	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr9:96264000-96268400	Strong transcription	Fetal Thymus	thymus
19	chr9:96264000-96269000	Weak transcription	Fetal Intestine Small	intestine
20	chr9:96264000-96269600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr9:96264000-96270400	Weak transcription	Pancreas	Pancrea
22	chr9:96264000-96270400	Weak transcription	Thymus	Thymus
23	chr9:96264000-96273000	Weak transcription	Ovary	ovary
24	chr9:96264000-96273200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr9:96264000-96273400	Weak transcription	Brain Cingulate Gyrus	brain
26	chr9:96264000-96273400	Weak transcription	Fetal Heart	heart
27	chr9:96264000-96273600	Weak transcription	Brain Angular Gyrus	brain
28	chr9:96264000-96275600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr9:96264000-96280400	Weak transcription	Colonic Mucosa	Colon
30	chr9:96264000-96281600	Weak transcription	Aorta	Aorta
31	chr9:96264000-96286600	Weak transcription	NH-A	brain
32	chr9:96264200-96268400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
33	chr9:96264200-96269800	Weak transcription	Right Ventricle	heart
34	chr9:96264200-96270000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
35	chr9:96264200-96270200	Weak transcription	Fetal Stomach	stomach
36	chr9:96264200-96275400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
37	chr9:96264200-96281800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr9:96264200-96288400	Weak transcription	HSMMtube	muscle
39	chr9:96264600-96271600	Strong transcription	Primary T cells from cord blood	blood
40	chr9:96265000-96269400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr9:96265400-96275400	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr9:96265600-96268400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
43	chr9:96265600-96268600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr9:96265800-96268600	Enhancers	Skeletal Muscle Female	skeletal muscle
45	chr9:96265800-96268800	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr9:96265800-96269800	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr9:96265800-96270400	Weak transcription	HMEC	breast
48	chr9:96265800-96273600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr9:96265800-96275600	Weak transcription	Cortex derived primary cultured neurospheres	brain
50	chr9:96265800-96278400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood

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