Variant report

Variant	rs7874126
Chromosome Location	chr9:96220609-96220610
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96220347..96222637-chr9:96242128..96243998,2	MCF-7	breast:
2	chr9:96220139..96221974-chr9:96287391..96289442,3	MCF-7	breast:
3	chr9:96220469..96222711-chr9:96337665..96339518,2	MCF-7	breast:
4	chr9:95963731..95965841-chr9:96218662..96220646,2	MCF-7	breast:
5	chr9:96219136..96220997-chr9:96281166..96283983,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs10046907	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10122014	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs10124517	0.82[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10512224	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10512226	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12552189	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12553275	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1317260	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs1331588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.88[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16909211	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1889338	0.82[EUR][1000 genomes]
rs1931369	0.82[EUR][1000 genomes]
rs2151714	0.82[EUR][1000 genomes]
rs2250236	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs2254715	0.82[JPT][hapmap]
rs28403269	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2994366	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs2994368	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs3815563	0.82[YRI][hapmap]
rs3897285	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4146138	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs4469524	0.82[EUR][1000 genomes]
rs4548243	0.82[EUR][1000 genomes]
rs4573340	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55649770	0.86[EUR][1000 genomes]
rs55702483	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55812345	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56375911	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57303681	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57631285	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58790127	0.95[EUR][1000 genomes]
rs59326991	0.96[AFR][1000 genomes]
rs60212988	0.88[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60253984	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60650773	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61340241	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6479480	0.82[EUR][1000 genomes]
rs6479483	0.93[AFR][1000 genomes]
rs7020195	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7020459	0.93[AFR][1000 genomes]
rs7025805	0.96[YRI][hapmap];0.96[AFR][1000 genomes]
rs7033849	0.85[CHB][hapmap]
rs7038564	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7044283	1.00[CHB][hapmap]
rs73651204	0.91[EUR][1000 genomes]
rs73651206	0.95[EUR][1000 genomes]
rs73651227	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73651228	0.95[EUR][1000 genomes]
rs73651229	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73651232	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73651246	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73651248	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7854217	0.95[EUR][1000 genomes]
rs7854349	0.83[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7857165	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs7861929	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7862998	0.94[AFR][1000 genomes]
rs914417	0.85[CHB][hapmap]
rs9299409	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs999326	0.95[EUR][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96216200-96228800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:96216400-96221000	Weak transcription	Aorta	Aorta
3	chr9:96216400-96230600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr9:96216600-96223400	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr9:96216600-96224000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr9:96216600-96231200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr9:96216600-96232800	Enhancers	Primary T helper cells fromperipheralblood	blood
8	chr9:96216800-96220800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
9	chr9:96216800-96222200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
10	chr9:96216800-96222400	Enhancers	HepG2	liver
11	chr9:96216800-96225000	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr9:96216800-96230600	Weak transcription	Fetal Stomach	stomach
13	chr9:96216800-96231400	Enhancers	Primary T cells from cord blood	blood
14	chr9:96217000-96221000	Weak transcription	Brain Anterior Caudate	brain
15	chr9:96217000-96221200	Weak transcription	Brain Substantia Nigra	brain
16	chr9:96217000-96222200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr9:96217000-96226200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr9:96217200-96221200	Weak transcription	H1 Cell Line	embryonic stem cell
19	chr9:96217200-96221400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr9:96217200-96239800	Weak transcription	Fetal Brain Female	brain
21	chr9:96217400-96220800	Weak transcription	Fetal Lung	lung
22	chr9:96217400-96221400	Weak transcription	HSMMtube	muscle
23	chr9:96217400-96222800	Weak transcription	Thymus	Thymus
24	chr9:96217400-96223200	Weak transcription	H9 Cell Line	embryonic stem cell
25	chr9:96217400-96228200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr9:96217400-96230800	Weak transcription	HSMM	muscle
27	chr9:96217600-96221200	Weak transcription	Brain Angular Gyrus	brain
28	chr9:96217600-96221400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr9:96217600-96221600	Weak transcription	Brain Cingulate Gyrus	brain
30	chr9:96217600-96223000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr9:96217600-96226000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr9:96217800-96221000	Weak transcription	HUES64 Cell Line	embryonic stem cell
33	chr9:96217800-96229000	Weak transcription	Brain Germinal Matrix	brain
34	chr9:96218000-96221800	Weak transcription	Primary B cells from cord blood	blood
35	chr9:96218000-96222000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
36	chr9:96218000-96222400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr9:96218200-96221600	Enhancers	Fetal Intestine Large	intestine
38	chr9:96218400-96222000	Genic enhancers	Dnd41	blood
39	chr9:96218400-96223600	Enhancers	Small Intestine	intestine
40	chr9:96218600-96221200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
41	chr9:96218600-96223600	Enhancers	Stomach Mucosa	stomach
42	chr9:96219000-96221000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr9:96219000-96221200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr9:96219000-96228000	Weak transcription	HUVEC	blood vessel
45	chr9:96219200-96221200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr9:96219200-96229000	Weak transcription	NH-A	brain
47	chr9:96219200-96233400	Weak transcription	Pancreatic Islets	Pancreatic Islet
48	chr9:96219400-96220800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
49	chr9:96219400-96220800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr9:96219400-96220800	Weak transcription	Brain Hippocampus Middle	brain

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