Variant report

Variant	rs999326
Chromosome Location	chr9:96163325-96163326
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96162175..96163726-chr9:96211698..96214352,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000048828	Chromatin interaction
ENSG00000188938	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10046907	0.81[EUR][1000 genomes]
rs10124517	0.86[EUR][1000 genomes]
rs10512224	0.95[EUR][1000 genomes]
rs10512226	1.00[EUR][1000 genomes]
rs12552189	0.86[EUR][1000 genomes]
rs12553275	1.00[EUR][1000 genomes]
rs1331588	1.00[EUR][1000 genomes]
rs16909211	0.95[EUR][1000 genomes]
rs1889338	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1931369	0.86[EUR][1000 genomes]
rs1931372	0.81[EUR][1000 genomes]
rs2151714	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs28403269	1.00[EUR][1000 genomes]
rs2991376	1.00[CEU][hapmap]
rs2995999	1.00[CEU][hapmap]
rs3001453	1.00[CEU][hapmap];0.83[YRI][hapmap]
rs3897285	0.90[EUR][1000 genomes]
rs4469524	0.86[EUR][1000 genomes]
rs4548243	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs4573340	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs4743913	1.00[CEU][hapmap]
rs4743916	0.81[EUR][1000 genomes]
rs4743920	0.81[EUR][1000 genomes]
rs4744229	0.81[EUR][1000 genomes]
rs55649770	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs55702483	1.00[EUR][1000 genomes]
rs55812345	0.95[EUR][1000 genomes]
rs56375911	1.00[EUR][1000 genomes]
rs57303681	0.91[EUR][1000 genomes]
rs57631285	0.90[EUR][1000 genomes]
rs58790127	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60212988	1.00[EUR][1000 genomes]
rs60253984	0.90[EUR][1000 genomes]
rs60650773	0.90[EUR][1000 genomes]
rs61340241	0.90[EUR][1000 genomes]
rs6479479	0.81[EUR][1000 genomes]
rs6479480	0.86[EUR][1000 genomes]
rs7020195	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs7025611	1.00[CEU][hapmap]
rs7038564	0.81[EUR][1000 genomes]
rs73651204	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73651206	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73651227	1.00[EUR][1000 genomes]
rs73651228	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73651229	1.00[EUR][1000 genomes]
rs73651232	1.00[EUR][1000 genomes]
rs73651246	0.90[EUR][1000 genomes]
rs73651248	0.90[EUR][1000 genomes]
rs7854217	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7854349	1.00[EUR][1000 genomes]
rs7861929	0.95[EUR][1000 genomes]
rs7874126	0.95[EUR][1000 genomes]

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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