Variant report
| Variant | rs55649770 |
|---|---|
| Chromosome Location | chr9:96162380-96162381 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
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(count:1 , 50 per page) page:
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| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-FAM120A-3 | chr9:96161588-96163051 | ucscGeneNc_uc004auq_1 |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000048828 | Chromatin interaction |
| ENSG00000188938 | Chromatin interaction |
| ENSG00000197724 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:35)
| rs_ID | r2[population] |
|---|---|
| rs10046907 | 0.81[EUR][1000 genomes] |
| rs10124517 | 0.85[EUR][1000 genomes] |
| rs10512224 | 0.86[EUR][1000 genomes] |
| rs10512226 | 0.90[EUR][1000 genomes] |
| rs12553275 | 0.90[EUR][1000 genomes] |
| rs1331588 | 0.90[EUR][1000 genomes] |
| rs16909211 | 0.86[EUR][1000 genomes] |
| rs28403269 | 0.90[EUR][1000 genomes] |
| rs3897285 | 0.81[EUR][1000 genomes] |
| rs4573340 | 0.88[AFR][1000 genomes];0.90[EUR][1000 genomes] |
| rs55702483 | 0.90[EUR][1000 genomes] |
| rs55812345 | 0.86[EUR][1000 genomes] |
| rs56375911 | 0.90[EUR][1000 genomes] |
| rs57303681 | 0.82[EUR][1000 genomes] |
| rs57631285 | 0.81[EUR][1000 genomes] |
| rs58790127 | 0.98[AFR][1000 genomes];0.90[EUR][1000 genomes] |
| rs60212988 | 0.90[EUR][1000 genomes] |
| rs60253984 | 0.89[EUR][1000 genomes] |
| rs60650773 | 0.89[EUR][1000 genomes] |
| rs61340241 | 0.89[EUR][1000 genomes] |
| rs7020195 | 0.90[EUR][1000 genomes] |
| rs7038564 | 0.81[EUR][1000 genomes] |
| rs73651204 | 1.00[AFR][1000 genomes];0.85[EUR][1000 genomes] |
| rs73651206 | 0.88[AFR][1000 genomes];0.90[EUR][1000 genomes] |
| rs73651227 | 0.90[EUR][1000 genomes] |
| rs73651228 | 0.88[AFR][1000 genomes];0.90[EUR][1000 genomes] |
| rs73651229 | 0.90[EUR][1000 genomes] |
| rs73651232 | 0.90[EUR][1000 genomes] |
| rs73651246 | 0.81[EUR][1000 genomes] |
| rs73651248 | 0.81[EUR][1000 genomes] |
| rs7854217 | 0.91[AFR][1000 genomes];0.90[EUR][1000 genomes] |
| rs7854349 | 0.90[EUR][1000 genomes] |
| rs7861929 | 0.86[EUR][1000 genomes] |
| rs7874126 | 0.86[EUR][1000 genomes] |
| rs999326 | 1.00[AFR][1000 genomes];0.90[EUR][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr9:96161600-96163000 | Enhancers | iPS DF 19.11 Cell Line | embryonic stem cell |
