Variant report

Variant	rs7020195
Chromosome Location	chr9:96188649-96188650
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96186967..96189025-chr9:96189208..96190783,2	MCF-7	breast:
2	chr9:96187415..96189664-chr9:96202942..96205697,3	K562	blood:
3	chr9:96187677..96190323-chr9:96214010..96216760,2	K562	blood:
4	chr9:96187963..96190929-chr9:96213884..96215462,2	K562	blood:
5	chr9:96188289..96190634-chr9:96191129..96192740,2	K562	blood:

Variant related genes	Relation type
ENSG00000048828	Chromatin interaction
ENSG00000188938	Chromatin interaction

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10046907	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs10122014	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs10124517	0.86[EUR][1000 genomes]
rs10512224	1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs10512226	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12552189	0.86[EUR][1000 genomes]
rs12553275	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1317260	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs1331588	1.00[CHB][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs16909211	0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes]
rs1889338	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs1931369	0.86[EUR][1000 genomes]
rs1931372	0.81[EUR][1000 genomes]
rs2151714	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs2250236	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs2254715	0.82[JPT][hapmap]
rs28403269	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2991376	1.00[CEU][hapmap]
rs2994366	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2994368	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs2995999	1.00[CEU][hapmap]
rs3001453	1.00[CEU][hapmap]
rs3897285	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4146138	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs4469524	0.86[EUR][1000 genomes]
rs4548243	1.00[CEU][hapmap];0.86[EUR][1000 genomes]
rs4573340	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4743913	1.00[CEU][hapmap]
rs4743916	0.81[EUR][1000 genomes]
rs4743920	0.81[EUR][1000 genomes]
rs4744229	0.81[EUR][1000 genomes]
rs55649770	0.90[EUR][1000 genomes]
rs55702483	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs55812345	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56375911	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57303681	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57631285	0.90[EUR][1000 genomes]
rs58790127	1.00[EUR][1000 genomes]
rs60212988	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs60253984	0.90[EUR][1000 genomes]
rs60650773	0.90[EUR][1000 genomes]
rs61340241	0.90[EUR][1000 genomes]
rs6479479	0.81[EUR][1000 genomes]
rs6479480	0.86[EUR][1000 genomes]
rs7025611	1.00[CEU][hapmap]
rs7033849	0.82[CHB][hapmap]
rs7038564	0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs7044283	1.00[CHB][hapmap]
rs73651204	0.95[EUR][1000 genomes]
rs73651206	1.00[EUR][1000 genomes]
rs73651227	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73651228	1.00[EUR][1000 genomes]
rs73651229	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73651232	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73651246	0.90[EUR][1000 genomes]
rs73651248	0.90[EUR][1000 genomes]
rs7854217	1.00[EUR][1000 genomes]
rs7854349	1.00[EUR][1000 genomes]
rs7857165	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs7861929	0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7874126	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs914417	0.82[CHB][hapmap]
rs9299409	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs999326	1.00[CEU][hapmap];1.00[EUR][1000 genomes]

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96185800-96208200	Weak transcription	Gastric	stomach
2	chr9:96186000-96208200	Weak transcription	Pancreas	Pancrea
3	chr9:96186600-96208200	Weak transcription	Lung	lung

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