Variant report

Variant	rs12552189
Chromosome Location	chr9:96282518-96282519
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96213470..96216216-chr9:96280346..96283406,4	MCF-7	breast:
2	chr9:96219136..96220997-chr9:96281166..96283983,2	MCF-7	breast:
3	chr9:96281724..96284045-chr9:96336142..96339221,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188938	Chromatin interaction
ENSG00000048828	Chromatin interaction
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10046907	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10124517	0.82[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10512224	0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10512226	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12553275	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1331588	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs16909211	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28403269	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3897285	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4573340	0.86[EUR][1000 genomes]
rs55702483	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55812345	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56375911	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57303681	0.80[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs57631285	0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58790127	0.86[EUR][1000 genomes]
rs59483310	0.93[AFR][1000 genomes]
rs60212988	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs60253984	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60610533	0.89[ASN][1000 genomes]
rs60650773	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61340241	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7020195	0.86[EUR][1000 genomes]
rs7038564	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73651204	0.82[EUR][1000 genomes]
rs73651206	0.86[EUR][1000 genomes]
rs73651227	0.86[EUR][1000 genomes]
rs73651228	0.86[EUR][1000 genomes]
rs73651229	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73651232	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73651246	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73651248	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7854217	0.86[EUR][1000 genomes]
rs7854349	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7861929	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7874126	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs999326	0.86[EUR][1000 genomes]

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96229600-96286200	Weak transcription	Fetal Brain Male	brain
2	chr9:96243000-96288000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr9:96260800-96290800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:96262200-96289000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr9:96263200-96285800	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr9:96263200-96287600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr9:96263200-96290200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr9:96263400-96289000	Weak transcription	Fetal Kidney	kidney
9	chr9:96264000-96286600	Weak transcription	NH-A	brain
10	chr9:96264200-96288400	Weak transcription	HSMMtube	muscle
11	chr9:96265800-96286200	Weak transcription	HUVEC	blood vessel
12	chr9:96265800-96286400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr9:96268000-96286400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr9:96270800-96285400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr9:96270800-96291600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr9:96273800-96286600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr9:96274000-96291000	Weak transcription	Small Intestine	intestine
18	chr9:96275800-96299600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
19	chr9:96276000-96295600	Weak transcription	Stomach Mucosa	stomach
20	chr9:96276000-96300000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr9:96276200-96286000	Weak transcription	Colon Smooth Muscle	Colon
22	chr9:96276200-96287800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
23	chr9:96276200-96290200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
24	chr9:96276200-96291400	Weak transcription	Brain Germinal Matrix	brain
25	chr9:96277400-96282800	Weak transcription	Right Atrium	heart
26	chr9:96277400-96284200	Weak transcription	Fetal Heart	heart
27	chr9:96278200-96283200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr9:96278200-96283200	Strong transcription	Thymus	Thymus
29	chr9:96278200-96283400	Strong transcription	Fetal Muscle Leg	muscle
30	chr9:96278200-96283600	Strong transcription	Dnd41	blood
31	chr9:96278200-96284400	Strong transcription	Fetal Intestine Large	intestine
32	chr9:96278400-96282600	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr9:96278400-96282800	Strong transcription	Left Ventricle	heart
34	chr9:96278400-96283000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr9:96278400-96283200	Strong transcription	Primary neutrophils fromperipheralblood	blood
36	chr9:96278400-96283400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr9:96278400-96283600	Strong transcription	Fetal Muscle Trunk	muscle
38	chr9:96278400-96283800	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr9:96278400-96283800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr9:96278400-96283800	Strong transcription	Fetal Stomach	stomach
41	chr9:96278400-96284000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr9:96278400-96310800	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr9:96278400-96327000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
44	chr9:96278400-96327200	Strong transcription	Primary monocytes fromperipheralblood	blood
45	chr9:96278400-96328200	Strong transcription	Monocytes-CD14+_RO01746	blood
46	chr9:96278600-96283600	Strong transcription	Liver	Liver
47	chr9:96278600-96311200	Strong transcription	Rectal Mucosa Donor 29	rectum
48	chr9:96278800-96283000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
49	chr9:96278800-96283600	Strong transcription	Fetal Thymus	thymus
50	chr9:96278800-96283600	Strong transcription	Stomach Smooth Muscle	stomach

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