Variant report

Variant	rs10512226
Chromosome Location	chr9:96225961-96225962
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr9:96223838..96225399-chr9:96225606..96227338,2	K562	blood:
2	chr9:96224548..96228951-chr9:96229326..96235685,10	K562	blood:
3	chr9:96225647..96228632-chr9:96240756..96242755,2	K562	blood:
4	chr9:96224590..96228623-chr9:96232472..96235685,5	K562	blood:
5	chr9:96224023..96227190-chr9:96336323..96339584,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000197724	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:62)

rs_ID	r²[population]
rs10046907	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10122014	0.82[CHB][hapmap];0.90[GIH][hapmap];0.82[JPT][hapmap]
rs10124517	0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs10512224	1.00[CEU][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1111776	0.85[TSI][hapmap]
rs12552189	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12553275	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1317260	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs1331588	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.85[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16909211	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1889338	0.86[EUR][1000 genomes]
rs1931369	0.86[EUR][1000 genomes]
rs1931372	0.81[EUR][1000 genomes]
rs2151714	0.86[EUR][1000 genomes]
rs2250236	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs2254715	0.82[JPT][hapmap]
rs28403269	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2994366	0.82[CHB][hapmap];1.00[JPT][hapmap]
rs2994368	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs35356734	0.80[AMR][1000 genomes]
rs3897285	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4146138	0.82[CHB][hapmap];0.90[GIH][hapmap];0.82[JPT][hapmap]
rs4469524	0.86[EUR][1000 genomes]
rs4548243	0.86[EUR][1000 genomes]
rs4573340	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4743916	0.81[EUR][1000 genomes]
rs4743920	0.81[EUR][1000 genomes]
rs4744229	0.81[EUR][1000 genomes]
rs55649770	0.90[EUR][1000 genomes]
rs55702483	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55812345	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56375911	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57303681	0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57631285	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs58790127	1.00[EUR][1000 genomes]
rs60212988	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60253984	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60610533	0.84[AMR][1000 genomes]
rs60650773	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61340241	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6479479	0.81[EUR][1000 genomes]
rs6479480	0.86[EUR][1000 genomes]
rs7020195	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7033849	0.82[CHB][hapmap]
rs7038564	1.00[CEU][hapmap];0.82[CHB][hapmap];1.00[CHD][hapmap];0.90[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7044283	1.00[CHB][hapmap]
rs73651204	0.95[EUR][1000 genomes]
rs73651206	1.00[EUR][1000 genomes]
rs73651227	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73651228	1.00[EUR][1000 genomes]
rs73651229	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73651232	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73651246	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73651248	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7854217	1.00[EUR][1000 genomes]
rs7854349	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7857165	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs7861929	0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7874126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs914417	0.82[CHB][hapmap]
rs9299409	0.82[CHB][hapmap];0.82[JPT][hapmap]
rs999326	1.00[EUR][1000 genomes]

No data

Chromatin state (count:121 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96216200-96228800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr9:96216400-96230600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr9:96216600-96231200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr9:96216600-96232800	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr9:96216800-96230600	Weak transcription	Fetal Stomach	stomach
6	chr9:96216800-96231400	Enhancers	Primary T cells from cord blood	blood
7	chr9:96217000-96226200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr9:96217200-96239800	Weak transcription	Fetal Brain Female	brain
9	chr9:96217400-96228200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr9:96217400-96230800	Weak transcription	HSMM	muscle
11	chr9:96217600-96226000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr9:96217800-96229000	Weak transcription	Brain Germinal Matrix	brain
13	chr9:96219000-96228000	Weak transcription	HUVEC	blood vessel
14	chr9:96219200-96229000	Weak transcription	NH-A	brain
15	chr9:96219200-96233400	Weak transcription	Pancreatic Islets	Pancreatic Islet
16	chr9:96219400-96226000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr9:96220600-96226600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr9:96220800-96226200	Enhancers	A549	lung
19	chr9:96220800-96227000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr9:96220800-96233200	Enhancers	Primary T helper cells PMA-I stimulated	--
21	chr9:96221200-96228200	Weak transcription	Aorta	Aorta
22	chr9:96221200-96229000	Weak transcription	Osteobl	bone
23	chr9:96221400-96228000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr9:96221600-96226600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr9:96221600-96226600	Enhancers	Monocytes-CD14+_RO01746	blood
26	chr9:96221600-96227200	Weak transcription	Gastric	stomach
27	chr9:96221600-96230600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr9:96221800-96226600	Weak transcription	Fetal Lung	lung
29	chr9:96222000-96226800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr9:96222000-96226800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr9:96222000-96228000	Weak transcription	Brain Angular Gyrus	brain
32	chr9:96222000-96228200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
33	chr9:96222000-96228600	Weak transcription	Rectal Smooth Muscle	rectum
34	chr9:96222200-96226000	Weak transcription	Cortex derived primary cultured neurospheres	brain
35	chr9:96222200-96226200	Weak transcription	Fetal Intestine Small	intestine
36	chr9:96222200-96226600	Weak transcription	Right Ventricle	heart
37	chr9:96222200-96227000	Weak transcription	Brain Anterior Caudate	brain
38	chr9:96222200-96227200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr9:96222200-96227200	Weak transcription	Adipose Nuclei	Adipose
40	chr9:96222200-96227400	Weak transcription	Stomach Smooth Muscle	stomach
41	chr9:96222200-96228000	Weak transcription	Esophagus	oesophagus
42	chr9:96222200-96228000	Weak transcription	Fetal Muscle Leg	muscle
43	chr9:96222200-96228000	Weak transcription	Ovary	ovary
44	chr9:96222200-96228200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
45	chr9:96222200-96228200	Weak transcription	Brain Cingulate Gyrus	brain
46	chr9:96222200-96228800	Weak transcription	NHLF	lung
47	chr9:96222200-96230600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
48	chr9:96222400-96226200	Weak transcription	Duodenum Smooth Muscle	Duodenum
49	chr9:96222600-96232200	Enhancers	Primary T killer memory cells from peripheral blood	blood
50	chr9:96222800-96230000	Enhancers	Primary hematopoietic stem cells	blood

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