Variant report

Variant	rs7027660
Chromosome Location	chr9:96108090-96108091
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10739946	0.95[EUR][1000 genomes]
rs10761213	1.00[ASN][1000 genomes]
rs1931372	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2494781	0.95[EUR][1000 genomes]
rs28421070	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2991376	0.80[AFR][1000 genomes]
rs2991380	0.86[EUR][1000 genomes]
rs2991383	0.90[EUR][1000 genomes]
rs2995993	0.93[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs2995994	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs2995999	0.83[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs3001449	0.80[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs3001453	0.90[EUR][1000 genomes]
rs4743913	0.81[EUR][1000 genomes]
rs4743914	0.81[EUR][1000 genomes]
rs4743916	0.81[EUR][1000 genomes]
rs4743920	0.81[EUR][1000 genomes]
rs4744229	0.81[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs6479479	0.81[EUR][1000 genomes]
rs7025611	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv893582	chr9:95963114-96116937	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv893584	chr9:96002983-96116937	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1798245	chr9:96098930-96120432	Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv972783	chr9:96104996-96108763	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96102800-96108200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr9:96105800-96108400	Weak transcription	Right Atrium	heart
3	chr9:96106800-96108200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr9:96106800-96108200	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr9:96107200-96109200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
6	chr9:96107400-96113000	Active TSS	iPS-15b Cell Line	embryonic stem cell
7	chr9:96107600-96108200	Enhancers	Fetal Lung	lung
8	chr9:96107600-96108400	Transcr. at gene 5' and 3'	ES-I3 Cell Line	embryonic stem cell
9	chr9:96107600-96111600	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
10	chr9:96107800-96108400	Bivalent Enhancer	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr9:96107800-96108400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr9:96107800-96108400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
13	chr9:96107800-96109000	Bivalent/Poised TSS	HUES64 Cell Line	embryonic stem cell
14	chr9:96107800-96109000	Active TSS	Brain Germinal Matrix	brain
15	chr9:96108000-96108200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr9:96108000-96108200	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr9:96108000-96108200	Flanking Bivalent TSS/Enh	Brain Hippocampus Middle	brain
18	chr9:96108000-96108200	Flanking Bivalent TSS/Enh	Fetal Intestine Large	intestine
19	chr9:96108000-96108200	Flanking Bivalent TSS/Enh	Fetal Intestine Small	intestine
20	chr9:96108000-96108200	Bivalent Enhancer	Fetal Muscle Leg	muscle
21	chr9:96108000-96108200	Enhancers	Ovary	ovary
22	chr9:96108000-96108200	Enhancers	Rectal Smooth Muscle	rectum
23	chr9:96108000-96108200	Enhancers	Right Ventricle	heart
24	chr9:96108000-96108400	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr9:96108000-96108400	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
26	chr9:96108000-96108400	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
27	chr9:96108000-96108400	Flanking Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
28	chr9:96108000-96108400	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr9:96108000-96108400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr9:96108000-96108400	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr9:96108000-96108400	Flanking Bivalent TSS/Enh	Brain Cingulate Gyrus	brain
32	chr9:96108000-96108400	Bivalent Enhancer	Duodenum Mucosa	Duodenum
33	chr9:96108000-96108400	Bivalent Enhancer	Esophagus	oesophagus
34	chr9:96108000-96108400	Flanking Active TSS	Fetal Brain Male	brain
35	chr9:96108000-96108400	Flanking Active TSS	Fetal Brain Female	brain
36	chr9:96108000-96108400	Flanking Bivalent TSS/Enh	Fetal Stomach	stomach
37	chr9:96108000-96108400	Enhancers	Lung	lung
38	chr9:96108000-96108400	Enhancers	Pancreas	Pancrea
39	chr9:96108000-96108400	Bivalent Enhancer	Placenta Amnion	Placenta Amnion
40	chr9:96108000-96108400	Bivalent Enhancer	Rectal Mucosa Donor 29	rectum
41	chr9:96108000-96108400	Bivalent Enhancer	Sigmoid Colon	Sigmoid Colon
42	chr9:96108000-96108400	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
43	chr9:96108000-96108600	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
44	chr9:96108000-96108600	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
45	chr9:96108000-96108600	Enhancers	Placenta	Placenta
46	chr9:96108000-96108800	Bivalent/Poised TSS	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr9:96108000-96108800	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
48	chr9:96108000-96108800	Bivalent Enhancer	Stomach Mucosa	stomach
49	chr9:96108000-96109000	Active TSS	Brain Anterior Caudate	brain
50	chr9:96108000-96109000	Enhancers	Spleen	Spleen

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