Variant report

Variant	rs10739946
Chromosome Location	chr9:96106667-96106668
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96102234..96103753-chr9:96106109..96107624,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs1889338	0.82[EUR][1000 genomes]
rs1931369	0.82[EUR][1000 genomes]
rs1931372	0.86[EUR][1000 genomes]
rs2151714	0.82[EUR][1000 genomes]
rs2494781	1.00[EUR][1000 genomes]
rs28421070	0.95[EUR][1000 genomes]
rs2991376	0.82[EUR][1000 genomes]
rs2991380	0.90[EUR][1000 genomes]
rs2991383	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2995993	0.95[EUR][1000 genomes]
rs2995994	0.90[EUR][1000 genomes]
rs2995999	0.95[EUR][1000 genomes]
rs3001449	0.90[EUR][1000 genomes]
rs3001453	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4469524	0.82[EUR][1000 genomes]
rs4548243	0.82[EUR][1000 genomes]
rs4743913	0.86[EUR][1000 genomes]
rs4743914	0.86[EUR][1000 genomes]
rs4743916	1.00[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4743920	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4744229	0.86[EUR][1000 genomes]
rs6479479	0.85[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6479480	0.82[EUR][1000 genomes]
rs7025611	0.86[EUR][1000 genomes]
rs7027660	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv893576	chr9:95789960-96158277	Active TSS Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv893582	chr9:95963114-96116937	Bivalent Enhancer Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv893584	chr9:96002983-96116937	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv1798245	chr9:96098930-96120432	Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Bivalent/Poised TSS Enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv972783	chr9:96104996-96108763	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:96098600-96108000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr9:96101400-96107200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr9:96102600-96107600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr9:96102800-96107200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr9:96102800-96107800	Weak transcription	Fetal Brain Male	brain
6	chr9:96102800-96108200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr9:96104800-96106800	Enhancers	Placenta	Placenta
8	chr9:96105000-96107800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr9:96105800-96106800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr9:96105800-96106800	Transcr. at gene 5' and 3'	HUES6 Cell Line	embryonic stem cell
11	chr9:96105800-96108400	Weak transcription	Right Atrium	heart
12	chr9:96106000-96106800	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr9:96106000-96106800	Active TSS	Brain Cingulate Gyrus	brain
14	chr9:96106000-96107200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr9:96106000-96107600	Active TSS	ES-I3 Cell Line	embryonic stem cell
16	chr9:96106000-96107800	Enhancers	H1 Cell Line	embryonic stem cell
17	chr9:96106200-96106800	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr9:96106200-96107200	Enhancers	H9 Cell Line	embryonic stem cell
19	chr9:96106400-96107200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr9:96106400-96107200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr9:96106600-96106800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
22	chr9:96106600-96106800	Enhancers	Brain Inferior Temporal Lobe	brain
23	chr9:96106600-96107400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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