Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr9:96162175..96163726-chr9:96211698..96214352,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000188938	Chromatin interaction
ENSG00000048828	Chromatin interaction

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10117236	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10117697	0.80[ASN][1000 genomes]
rs10217595	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10992720	1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs12551084	1.00[CEU][hapmap]
rs12553389	0.88[CEU][hapmap]
rs12554164	1.00[CEU][hapmap]
rs12555047	0.83[ASN][1000 genomes]
rs12555823	0.84[ASN][1000 genomes]
rs16909150	1.00[CEU][hapmap]
rs16909158	1.00[CEU][hapmap]
rs16909273	0.88[CEU][hapmap]
rs17532098	0.85[CEU][hapmap]
rs1999386	0.88[CEU][hapmap]
rs2266010	0.93[JPT][hapmap];0.87[ASN][1000 genomes]
rs2841683	0.88[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs3893381	0.88[CEU][hapmap]
rs55766809	0.83[ASN][1000 genomes]
rs55814723	0.82[ASN][1000 genomes]
rs55846141	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55893789	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7035657	0.80[CEU][hapmap]
rs7036984	0.80[CEU][hapmap]
rs7863760	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs883783	1.00[CEU][hapmap]
rs883785	0.88[CEU][hapmap]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs4255201	RP11-165J3.6	cis	Esophagus Muscularis	GTEx
rs4255201	RP11-165J3.6	cis	Thyroid	GTEx
rs4255201	RP11-165J3.6	cis	Skin Sun Exposed Lower leg	GTEx

Chromatin state (count:0 , 50 per page) page:

No data

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