Variant report

Variant	rs1100324
Chromosome Location	chr9:118044633-118044634
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10817738	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs10982625	1.00[CHB][hapmap]
rs10982643	0.95[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11496558	1.00[CHB][hapmap]
rs11790089	0.92[CEU][hapmap];1.00[CHB][hapmap]
rs1335329	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1335337	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs1557602	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1557604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2225749	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[YRI][hapmap]
rs34855510	0.89[ASN][1000 genomes]
rs4526430	0.89[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv615251	chr9:117975864-118514444	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1100324	C9orf91	cis	brain	BrainEAC

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:118041000-118045200	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr9:118041200-118045000	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr9:118041200-118045000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr9:118042800-118052800	Weak transcription	Gastric	stomach
5	chr9:118043200-118045000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr9:118043600-118045200	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr9:118044200-118051800	Weak transcription	Cortex derived primary cultured neurospheres	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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